dbCAN Logo

Cluster: HRGMv2_0188_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0188_3 HRGMv2_0188_3_22 20440 21564 - 3.A.1.105.15
TC HRGMv2_0188_3 HRGMv2_0188_3_23 21566 22675 - 3.A.1.105.4
TC HRGMv2_0188_3 HRGMv2_0188_3_24 22683 23429 - 3.A.1.105.4
TC HRGMv2_0188_3 HRGMv2_0188_3_25 23479 24423 - 3.A.1.105.6
TC HRGMv2_0188_3 HRGMv2_0188_3_26 24426 25343 - 3.A.1.105.15
pfam HRGMv2_0188_3 HRGMv2_0188_3_27 25340 26602 - OEP | OEP
STP HRGMv2_0188_3 HRGMv2_0188_3_28 26618 27274 - TetR_N
CAZyme HRGMv2_0188_3 HRGMv2_0188_3_29 27368 29857 + GH2
Gene ID: HRGMv2_0188_3_22
Type: TC
Location: 20440 - 21564 (-)
Gene ID: HRGMv2_0188_3_23
Type: TC
Location: 21566 - 22675 (-)
Gene ID: HRGMv2_0188_3_24
Type: TC
Location: 22683 - 23429 (-)
Gene ID: HRGMv2_0188_3_25
Type: TC
Location: 23479 - 24423 (-)
Gene ID: HRGMv2_0188_3_26
Type: TC
Location: 24426 - 25343 (-)
Gene ID: HRGMv2_0188_3_27
Type: pfam
Location: 25340 - 26602 (-)
Gene ID: HRGMv2_0188_3_28
Type: STP
Location: 26618 - 27274 (-)
Gene ID: HRGMv2_0188_3_29
Type: CAZyme
Location: 27368 - 29857 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List