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Cluster: HRGMv2_0188_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0188_17 HRGMv2_0188_17_9 9023 10585 + 3.B.1.1.2
pfam HRGMv2_0188_17 HRGMv2_0188_17_10 10588 11511 + LTD | OAD_gamma
TC HRGMv2_0188_17 HRGMv2_0188_17_11 11539 11982 + 3.B.1.1.2
TC HRGMv2_0188_17 HRGMv2_0188_17_12 11987 13129 + 3.B.1.1.3
TC HRGMv2_0188_17 HRGMv2_0188_17_13 13210 13578 - 9.B.124.1.6
NULL(UNKNOWN) HRGMv2_0188_17 HRGMv2_0188_17_14 13734 14342 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0188_17 HRGMv2_0188_17_15 14342 14944 + DUF2764
TC HRGMv2_0188_17 HRGMv2_0188_17_16 14966 16720 + 3.A.2.3.3
TC HRGMv2_0188_17 HRGMv2_0188_17_17 16710 18032 + 3.A.2.3.3
pfam HRGMv2_0188_17 HRGMv2_0188_17_18 18032 18658 + ATP-synt_D
TC HRGMv2_0188_17 HRGMv2_0188_17_19 18651 20489 + 3.A.2.3.3
pfam HRGMv2_0188_17 HRGMv2_0188_17_20 20514 20933 + ATP-synt_C | ATP-synt_C
pfam HRGMv2_0188_17 HRGMv2_0188_17_21 20955 22412 + PGM_PMM_IV | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III
CAZyme HRGMv2_0188_17 HRGMv2_0188_17_22 22561 23625 + GH171
pfam HRGMv2_0188_17 HRGMv2_0188_17_23 23731 25908 - Helicase_C | ResIII | UvrB | UvrB_inter
pfam HRGMv2_0188_17 HRGMv2_0188_17_24 25998 27020 + PAD_porph
TC HRGMv2_0188_17 HRGMv2_0188_17_25 27024 28499 - 1.A.13.2.3
Gene ID: HRGMv2_0188_17_9
Type: TC
Location: 9023 - 10585 (+)
Gene ID: HRGMv2_0188_17_10
Type: pfam
Location: 10588 - 11511 (+)
Gene ID: HRGMv2_0188_17_11
Type: TC
Location: 11539 - 11982 (+)
Gene ID: HRGMv2_0188_17_12
Type: TC
Location: 11987 - 13129 (+)
Gene ID: HRGMv2_0188_17_13
Type: TC
Location: 13210 - 13578 (-)
Gene ID: HRGMv2_0188_17_14
Type:
Location: 13734 - 14342 (+)
Gene ID: HRGMv2_0188_17_15
Type: pfam
Location: 14342 - 14944 (+)
Gene ID: HRGMv2_0188_17_16
Type: TC
Location: 14966 - 16720 (+)
Gene ID: HRGMv2_0188_17_17
Type: TC
Location: 16710 - 18032 (+)
Gene ID: HRGMv2_0188_17_18
Type: pfam
Location: 18032 - 18658 (+)
Gene ID: HRGMv2_0188_17_19
Type: TC
Location: 18651 - 20489 (+)
Gene ID: HRGMv2_0188_17_20
Type: pfam
Location: 20514 - 20933 (+)
Gene ID: HRGMv2_0188_17_21
Type: pfam
Location: 20955 - 22412 (+)
Gene ID: HRGMv2_0188_17_22
Type: CAZyme
Location: 22561 - 23625 (+)
Gene ID: HRGMv2_0188_17_23
Type: pfam
Location: 23731 - 25908 (-)
Gene ID: HRGMv2_0188_17_24
Type: pfam
Location: 25998 - 27020 (+)
Gene ID: HRGMv2_0188_17_25
Type: TC
Location: 27024 - 28499 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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