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Cluster: HRGMv2_0188_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0188_7 HRGMv2_0188_7_8 4685 7054 + 2.A.6.7.7
TC HRGMv2_0188_7 HRGMv2_0188_7_9 7075 8853 + 3.A.1.21.1
TC HRGMv2_0188_7 HRGMv2_0188_7_10 8876 10570 + 3.A.1.21.1
pfam HRGMv2_0188_7 HRGMv2_0188_7_11 10629 11378 + DUF1329 | DUF1329 | LolA_like
pfam HRGMv2_0188_7 HRGMv2_0188_7_12 11378 12637 + DUF1302
TC HRGMv2_0188_7 HRGMv2_0188_7_13 12655 14997 + 1.B.14.3.6
pfam HRGMv2_0188_7 HRGMv2_0188_7_14 15032 16270 + DUF5074
peptidase HRGMv2_0188_7 HRGMv2_0188_7_15 16797 18374 + C69.UPW
CAZyme HRGMv2_0188_7 HRGMv2_0188_7_16 18400 19101 + CE4
Gene ID: HRGMv2_0188_7_8
Type: TC
Location: 4685 - 7054 (+)
Gene ID: HRGMv2_0188_7_9
Type: TC
Location: 7075 - 8853 (+)
Gene ID: HRGMv2_0188_7_10
Type: TC
Location: 8876 - 10570 (+)
Gene ID: HRGMv2_0188_7_11
Type: pfam
Location: 10629 - 11378 (+)
Gene ID: HRGMv2_0188_7_12
Type: pfam
Location: 11378 - 12637 (+)
Gene ID: HRGMv2_0188_7_13
Type: TC
Location: 12655 - 14997 (+)
Gene ID: HRGMv2_0188_7_14
Type: pfam
Location: 15032 - 16270 (+)
Gene ID: HRGMv2_0188_7_15
Type: peptidase
Location: 16797 - 18374 (+)
Gene ID: HRGMv2_0188_7_16
Type: CAZyme
Location: 18400 - 19101 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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