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Cluster: HRGMv2_0187_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0187_16 HRGMv2_0187_16_40 50474 52894 - 1.B.14.6.12
STP HRGMv2_0187_16 HRGMv2_0187_16_41 53094 54362 + Peptidase_M23
CAZyme HRGMv2_0187_16 HRGMv2_0187_16_42 54481 56826 + GH3
NULL(UNKNOWN) HRGMv2_0187_16 HRGMv2_0187_16_43 56823 57662 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0187_16 HRGMv2_0187_16_44 57756 60401 + 1.A.23.1.1
pfam HRGMv2_0187_16 HRGMv2_0187_16_45 60408 60989 + Formyl_trans_N
TF HRGMv2_0187_16 HRGMv2_0187_16_46 61071 61808 - LytTR
TC HRGMv2_0187_16 HRGMv2_0187_16_47 61805 62836 - 8.A.59.2.1
Gene ID: HRGMv2_0187_16_40
Type: TC
Location: 50474 - 52894 (-)
Gene ID: HRGMv2_0187_16_41
Type: STP
Location: 53094 - 54362 (+)
Gene ID: HRGMv2_0187_16_42
Type: CAZyme
Location: 54481 - 56826 (+)
Gene ID: HRGMv2_0187_16_43
Type:
Location: 56823 - 57662 (-)
Gene ID: HRGMv2_0187_16_44
Type: TC
Location: 57756 - 60401 (+)
Gene ID: HRGMv2_0187_16_45
Type: pfam
Location: 60408 - 60989 (+)
Gene ID: HRGMv2_0187_16_46
Type: TF
Location: 61071 - 61808 (-)
Gene ID: HRGMv2_0187_16_47
Type: TC
Location: 61805 - 62836 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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