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Cluster: HRGMv2_0187_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0187_13 HRGMv2_0187_13_12 15022 16335 - 2.A.1.49.1
TF HRGMv2_0187_13 HRGMv2_0187_13_13 16502 17536 + GntR
pfam HRGMv2_0187_13 HRGMv2_0187_13_14 17635 18501 + Exo_endo_phos
CAZyme HRGMv2_0187_13 HRGMv2_0187_13_15 18616 20046 + GH39
TC HRGMv2_0187_13 HRGMv2_0187_13_16 20075 23257 + 1.B.14.6.1
pfam HRGMv2_0187_13 HRGMv2_0187_13_17 23257 25152 + SusD_RagB | SusD-like_3
TC HRGMv2_0187_13 HRGMv2_0187_13_18 25168 27975 + 1.B.14.6.1
pfam HRGMv2_0187_13 HRGMv2_0187_13_19 27991 29781 + SusD_RagB | SusD-like_3
pfam HRGMv2_0187_13 HRGMv2_0187_13_20 29801 30841 + BT_3987-like_N
CAZyme HRGMv2_0187_13 HRGMv2_0187_13_21 30834 33956 + GH50
Gene ID: HRGMv2_0187_13_12
Type: TC
Location: 15022 - 16335 (-)
Gene ID: HRGMv2_0187_13_13
Type: TF
Location: 16502 - 17536 (+)
Gene ID: HRGMv2_0187_13_14
Type: pfam
Location: 17635 - 18501 (+)
Gene ID: HRGMv2_0187_13_15
Type: CAZyme
Location: 18616 - 20046 (+)
Gene ID: HRGMv2_0187_13_16
Type: TC
Location: 20075 - 23257 (+)
Gene ID: HRGMv2_0187_13_17
Type: pfam
Location: 23257 - 25152 (+)
Gene ID: HRGMv2_0187_13_18
Type: TC
Location: 25168 - 27975 (+)
Gene ID: HRGMv2_0187_13_19
Type: pfam
Location: 27991 - 29781 (+)
Gene ID: HRGMv2_0187_13_20
Type: pfam
Location: 29801 - 30841 (+)
Gene ID: HRGMv2_0187_13_21
Type: CAZyme
Location: 30834 - 33956 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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