Cluster: HRGMv2_0185_CGC16
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0185
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0185_11 | HRGMv2_0185_11_69 | 88427 | 89590 | + | 2.A.1.2.97 |
| pfam | HRGMv2_0185_11 | HRGMv2_0185_11_70 | 89720 | 90538 | - | Lactamase_B | Lactamase_B_2 |
| TC | HRGMv2_0185_11 | HRGMv2_0185_11_71 | 91103 | 92785 | + | 9.B.174.1.2 |
| NULL(UNKNOWN) | HRGMv2_0185_11 | HRGMv2_0185_11_72 | 93847 | 94437 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0185_11 | HRGMv2_0185_11_73 | 94437 | 95300 | + | PAD_porph |
| CAZyme | HRGMv2_0185_11 | HRGMv2_0185_11_74 | 95491 | 99171 | - | CE8 | PL1_2 |
Gene ID: HRGMv2_0185_11_69
Type: TC
Location: 88427 - 89590 (+)
Type: TC
Location: 88427 - 89590 (+)
Gene ID: HRGMv2_0185_11_70
Type: pfam
Location: 89720 - 90538 (-)
Type: pfam
Location: 89720 - 90538 (-)
Gene ID: HRGMv2_0185_11_71
Type: TC
Location: 91103 - 92785 (+)
Type: TC
Location: 91103 - 92785 (+)
Gene ID: HRGMv2_0185_11_72
Type:
Location: 93847 - 94437 (+)
Type:
Location: 93847 - 94437 (+)
Gene ID: HRGMv2_0185_11_73
Type: pfam
Location: 94437 - 95300 (+)
Type: pfam
Location: 94437 - 95300 (+)
Gene ID: HRGMv2_0185_11_74
Type: CAZyme
Location: 95491 - 99171 (-)
Type: CAZyme
Location: 95491 - 99171 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella rara
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0185_11_69 | vegetarian > omnivore | 1.04007 | 0.01930 |
| HRGMv2_0185_11_69 | vegetarian > vegan | 1.28396 | 0.00160 |
| HRGMv2_0185_11_72 | vegetarian > omnivore | 1.58762 | 0.01930 |
| HRGMv2_0185_11_72 | vegetarian > vegan | 7.38387 | 0.00160 |
| HRGMv2_0185_11_73 | vegetarian > omnivore | 1.80399 | 0.01073 |
| HRGMv2_0185_11_73 | vegetarian > vegan | 8.15486 | 0.00160 |
| HRGMv2_0185_11_74 | vegetarian > omnivore | 1.02561 | 0.01930 |
| HRGMv2_0185_11_74 | vegetarian > vegan | 1.05397 | 0.00160 |