Cluster: HRGMv2_0184_CGC6
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0184
- CGC Family ID: CGCFAM_07963
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0184_2 | HRGMv2_0184_2_15 | 18086 | 19465 | + | 9.B.126.2.2 |
| CAZyme | HRGMv2_0184_2 | HRGMv2_0184_2_16 | 19553 | 21469 | + | PL33_1 |
| CAZyme | HRGMv2_0184_2 | HRGMv2_0184_2_17 | 21822 | 22769 | + | GT2 |
| NULL(UNKNOWN) | HRGMv2_0184_2 | HRGMv2_0184_2_18 | 22777 | 22875 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0184_2 | HRGMv2_0184_2_19 | 22974 | 24836 | - | 2.A.47.4.8 |
| TC | HRGMv2_0184_2 | HRGMv2_0184_2_20 | 25041 | 26489 | - | 2.A.1.1.3 |
Gene ID: HRGMv2_0184_2_15
Type: TC
Location: 18086 - 19465 (+)
Type: TC
Location: 18086 - 19465 (+)
Gene ID: HRGMv2_0184_2_16
Type: CAZyme
Location: 19553 - 21469 (+)
Type: CAZyme
Location: 19553 - 21469 (+)
Gene ID: HRGMv2_0184_2_17
Type: CAZyme
Location: 21822 - 22769 (+)
Type: CAZyme
Location: 21822 - 22769 (+)
Gene ID: HRGMv2_0184_2_18
Type:
Location: 22777 - 22875 (+)
Type:
Location: 22777 - 22875 (+)
Gene ID: HRGMv2_0184_2_19
Type: TC
Location: 22974 - 24836 (-)
Type: TC
Location: 22974 - 24836 (-)
Gene ID: HRGMv2_0184_2_20
Type: TC
Location: 25041 - 26489 (-)
Type: TC
Location: 25041 - 26489 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Coprobacteraceae
Genus
Coprobacter
Species
Coprobacter sp900545915
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.