Cluster: HRGMv2_0184_CGC55
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 9
- Substrate:
- Genome ID: HRGMv2_0184
- CGC Family ID: CGCFAM_00494
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0184_35 | HRGMv2_0184_35_7 | 5958 | 7400 | + | 2.A.66.2.6 |
| NULL(UNKNOWN) | HRGMv2_0184_35 | HRGMv2_0184_35_8 | 7397 | 8224 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0184_35 | HRGMv2_0184_35_9 | 8236 | 9120 | + | GT101 |
| CAZyme | HRGMv2_0184_35 | HRGMv2_0184_35_10 | 9125 | 10084 | + | GT2 |
| CAZyme | HRGMv2_0184_35 | HRGMv2_0184_35_11 | 10081 | 11262 | + | GT4 |
| CAZyme | HRGMv2_0184_35 | HRGMv2_0184_35_12 | 11259 | 12443 | + | GT4 |
| CAZyme | HRGMv2_0184_35 | HRGMv2_0184_35_13 | 12613 | 13782 | + | GT4 |
| NULL(UNKNOWN) | HRGMv2_0184_35 | HRGMv2_0184_35_14 | 13799 | 14332 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0184_35 | HRGMv2_0184_35_15 | 14545 | 15777 | + | Wzy_C |
| CAZyme | HRGMv2_0184_35 | HRGMv2_0184_35_16 | 15809 | 16915 | + | GT4 |
| pfam | HRGMv2_0184_35 | HRGMv2_0184_35_17 | 16929 | 17948 | + | Acyl_transf_3 |
| CAZyme | HRGMv2_0184_35 | HRGMv2_0184_35_18 | 17950 | 19089 | + | GT4 |
| NULL(UNKNOWN) | HRGMv2_0184_35 | HRGMv2_0184_35_19 | 19076 | 19879 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_0184_35 | HRGMv2_0184_35_20 | 19883 | 20437 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0184_35 | HRGMv2_0184_35_21 | 20448 | 21347 | + | GT2 |
| pfam | HRGMv2_0184_35 | HRGMv2_0184_35_22 | 21351 | 22352 | + | Acyl_transf_3 |
| CAZyme | HRGMv2_0184_35 | HRGMv2_0184_35_23 | 22354 | 23142 | + | GT2 |
| TC | HRGMv2_0184_35 | HRGMv2_0184_35_24 | 23996 | 25108 | + | 9.B.146.1.4 |
Gene ID: HRGMv2_0184_35_7
Type: TC
Location: 5958 - 7400 (+)
Type: TC
Location: 5958 - 7400 (+)
Gene ID: HRGMv2_0184_35_8
Type:
Location: 7397 - 8224 (+)
Type:
Location: 7397 - 8224 (+)
Gene ID: HRGMv2_0184_35_9
Type: CAZyme
Location: 8236 - 9120 (+)
Type: CAZyme
Location: 8236 - 9120 (+)
Gene ID: HRGMv2_0184_35_10
Type: CAZyme
Location: 9125 - 10084 (+)
Type: CAZyme
Location: 9125 - 10084 (+)
Gene ID: HRGMv2_0184_35_11
Type: CAZyme
Location: 10081 - 11262 (+)
Type: CAZyme
Location: 10081 - 11262 (+)
Gene ID: HRGMv2_0184_35_12
Type: CAZyme
Location: 11259 - 12443 (+)
Type: CAZyme
Location: 11259 - 12443 (+)
Gene ID: HRGMv2_0184_35_13
Type: CAZyme
Location: 12613 - 13782 (+)
Type: CAZyme
Location: 12613 - 13782 (+)
Gene ID: HRGMv2_0184_35_14
Type:
Location: 13799 - 14332 (+)
Type:
Location: 13799 - 14332 (+)
Gene ID: HRGMv2_0184_35_15
Type: pfam
Location: 14545 - 15777 (+)
Type: pfam
Location: 14545 - 15777 (+)
Gene ID: HRGMv2_0184_35_16
Type: CAZyme
Location: 15809 - 16915 (+)
Type: CAZyme
Location: 15809 - 16915 (+)
Gene ID: HRGMv2_0184_35_17
Type: pfam
Location: 16929 - 17948 (+)
Type: pfam
Location: 16929 - 17948 (+)
Gene ID: HRGMv2_0184_35_18
Type: CAZyme
Location: 17950 - 19089 (+)
Type: CAZyme
Location: 17950 - 19089 (+)
Gene ID: HRGMv2_0184_35_19
Type:
Location: 19076 - 19879 (+)
Type:
Location: 19076 - 19879 (+)
Gene ID: HRGMv2_0184_35_20
Type:
Location: 19883 - 20437 (+)
Type:
Location: 19883 - 20437 (+)
Gene ID: HRGMv2_0184_35_21
Type: CAZyme
Location: 20448 - 21347 (+)
Type: CAZyme
Location: 20448 - 21347 (+)
Gene ID: HRGMv2_0184_35_22
Type: pfam
Location: 21351 - 22352 (+)
Type: pfam
Location: 21351 - 22352 (+)
Gene ID: HRGMv2_0184_35_23
Type: CAZyme
Location: 22354 - 23142 (+)
Type: CAZyme
Location: 22354 - 23142 (+)
Gene ID: HRGMv2_0184_35_24
Type: TC
Location: 23996 - 25108 (+)
Type: TC
Location: 23996 - 25108 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Coprobacteraceae
Genus
Coprobacter
Species
Coprobacter sp900545915
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.