Cluster: HRGMv2_0184_CGC52
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_0184
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0184_33 | HRGMv2_0184_33_11 | 9738 | 11162 | + | 2.A.62.1.3 |
| CAZyme | HRGMv2_0184_33 | HRGMv2_0184_33_12 | 11434 | 13719 | + | GH92 |
| CAZyme | HRGMv2_0184_33 | HRGMv2_0184_33_13 | 13745 | 16015 | + | GH92 |
| pfam | HRGMv2_0184_33 | HRGMv2_0184_33_14 | 16083 | 17363 | + | MFS_1 | MFS_1 |
| CAZyme | HRGMv2_0184_33 | HRGMv2_0184_33_15 | 17413 | 18384 | + | GH130_2 |
| CAZyme | HRGMv2_0184_33 | HRGMv2_0184_33_16 | 18397 | 20673 | + | GH92 |
Gene ID: HRGMv2_0184_33_11
Type: TC
Location: 9738 - 11162 (+)
Type: TC
Location: 9738 - 11162 (+)
Gene ID: HRGMv2_0184_33_12
Type: CAZyme
Location: 11434 - 13719 (+)
Type: CAZyme
Location: 11434 - 13719 (+)
Gene ID: HRGMv2_0184_33_13
Type: CAZyme
Location: 13745 - 16015 (+)
Type: CAZyme
Location: 13745 - 16015 (+)
Gene ID: HRGMv2_0184_33_14
Type: pfam
Location: 16083 - 17363 (+)
Type: pfam
Location: 16083 - 17363 (+)
Gene ID: HRGMv2_0184_33_15
Type: CAZyme
Location: 17413 - 18384 (+)
Type: CAZyme
Location: 17413 - 18384 (+)
Gene ID: HRGMv2_0184_33_16
Type: CAZyme
Location: 18397 - 20673 (+)
Type: CAZyme
Location: 18397 - 20673 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Coprobacteraceae
Genus
Coprobacter
Species
Coprobacter sp900545915
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.