Cluster: HRGMv2_0184_CGC46
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0184
- CGC Family ID: CGCFAM_07967
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0184_24 | HRGMv2_0184_24_24 | 26076 | 27650 | - | 3.D.10.1.4 |
| pfam | HRGMv2_0184_24 | HRGMv2_0184_24_25 | 27755 | 28183 | + | bPH_4 |
| CAZyme | HRGMv2_0184_24 | HRGMv2_0184_24_26 | 28262 | 30868 | - | GH3 |
| pfam | HRGMv2_0184_24 | HRGMv2_0184_24_27 | 30907 | 31917 | - | 3Beta_HSD | Epimerase | RmlD_sub_bind | NmrA | NAD_binding_10 | GDP_Man_Dehyd |
| pfam | HRGMv2_0184_24 | HRGMv2_0184_24_28 | 32115 | 35372 | + | TMEM260-like |
| CAZyme | HRGMv2_0184_24 | HRGMv2_0184_24_29 | 35448 | 36071 | + | CE4 |
Gene ID: HRGMv2_0184_24_24
Type: TC
Location: 26076 - 27650 (-)
Type: TC
Location: 26076 - 27650 (-)
Gene ID: HRGMv2_0184_24_25
Type: pfam
Location: 27755 - 28183 (+)
Type: pfam
Location: 27755 - 28183 (+)
Gene ID: HRGMv2_0184_24_26
Type: CAZyme
Location: 28262 - 30868 (-)
Type: CAZyme
Location: 28262 - 30868 (-)
Gene ID: HRGMv2_0184_24_27
Type: pfam
Location: 30907 - 31917 (-)
Type: pfam
Location: 30907 - 31917 (-)
Gene ID: HRGMv2_0184_24_28
Type: pfam
Location: 32115 - 35372 (+)
Type: pfam
Location: 32115 - 35372 (+)
Gene ID: HRGMv2_0184_24_29
Type: CAZyme
Location: 35448 - 36071 (+)
Type: CAZyme
Location: 35448 - 36071 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Coprobacteraceae
Genus
Coprobacter
Species
Coprobacter sp900545915
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.