Cluster: HRGMv2_0184_CGC45
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0184
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0184_23 | HRGMv2_0184_23_11 | 17805 | 21326 | + | 1.B.14.6.2 |
| TC | HRGMv2_0184_23 | HRGMv2_0184_23_12 | 21343 | 23223 | + | 8.A.46.2.2 |
| CAZyme | HRGMv2_0184_23 | HRGMv2_0184_23_13 | 23253 | 27578 | + | CBM32 | GH85 |
| TC | HRGMv2_0184_23 | HRGMv2_0184_23_14 | 27982 | 32856 | + | 2.A.16.2.2 |
| NULL(UNKNOWN) | HRGMv2_0184_23 | HRGMv2_0184_23_15 | 32937 | 33134 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0184_23 | HRGMv2_0184_23_16 | 33069 | 34979 | - | 1.A.33.1.2 |
| STP | HRGMv2_0184_23 | HRGMv2_0184_23_17 | 35605 | 36018 | + | Glyoxalase |
| TC | HRGMv2_0184_23 | HRGMv2_0184_23_18 | 36036 | 37589 | + | 3.B.1.1.2 |
| pfam | HRGMv2_0184_23 | HRGMv2_0184_23_19 | 37613 | 38500 | + | LTD | OAD_gamma |
| pfam | HRGMv2_0184_23 | HRGMv2_0184_23_20 | 38519 | 38950 | + | Biotin_lipoyl | Biotin_lipoyl_2 |
| TC | HRGMv2_0184_23 | HRGMv2_0184_23_21 | 38955 | 40115 | + | 3.B.1.1.2 |
| pfam | HRGMv2_0184_23 | HRGMv2_0184_23_22 | 40357 | 40923 | - | Pentapeptide | Pentapeptide | Pentapeptide_4 | Pentapeptide_4 |
| CAZyme | HRGMv2_0184_23 | HRGMv2_0184_23_23 | 41044 | 42057 | + | GT2 |
| pfam | HRGMv2_0184_23 | HRGMv2_0184_23_24 | 42245 | 43663 | - | Polysacc_synt |
| pfam | HRGMv2_0184_23 | HRGMv2_0184_23_25 | 44359 | 45960 | - | PEPCK_ATP |
| TC | HRGMv2_0184_23 | HRGMv2_0184_23_26 | 46133 | 47572 | - | 2.A.1.14.25 |
Gene ID: HRGMv2_0184_23_11
Type: TC
Location: 17805 - 21326 (+)
Type: TC
Location: 17805 - 21326 (+)
Gene ID: HRGMv2_0184_23_12
Type: TC
Location: 21343 - 23223 (+)
Type: TC
Location: 21343 - 23223 (+)
Gene ID: HRGMv2_0184_23_13
Type: CAZyme
Location: 23253 - 27578 (+)
Type: CAZyme
Location: 23253 - 27578 (+)
Gene ID: HRGMv2_0184_23_14
Type: TC
Location: 27982 - 32856 (+)
Type: TC
Location: 27982 - 32856 (+)
Gene ID: HRGMv2_0184_23_15
Type:
Location: 32937 - 33134 (+)
Type:
Location: 32937 - 33134 (+)
Gene ID: HRGMv2_0184_23_16
Type: TC
Location: 33069 - 34979 (-)
Type: TC
Location: 33069 - 34979 (-)
Gene ID: HRGMv2_0184_23_17
Type: STP
Location: 35605 - 36018 (+)
Type: STP
Location: 35605 - 36018 (+)
Gene ID: HRGMv2_0184_23_18
Type: TC
Location: 36036 - 37589 (+)
Type: TC
Location: 36036 - 37589 (+)
Gene ID: HRGMv2_0184_23_19
Type: pfam
Location: 37613 - 38500 (+)
Type: pfam
Location: 37613 - 38500 (+)
Gene ID: HRGMv2_0184_23_20
Type: pfam
Location: 38519 - 38950 (+)
Type: pfam
Location: 38519 - 38950 (+)
Gene ID: HRGMv2_0184_23_21
Type: TC
Location: 38955 - 40115 (+)
Type: TC
Location: 38955 - 40115 (+)
Gene ID: HRGMv2_0184_23_22
Type: pfam
Location: 40357 - 40923 (-)
Type: pfam
Location: 40357 - 40923 (-)
Gene ID: HRGMv2_0184_23_23
Type: CAZyme
Location: 41044 - 42057 (+)
Type: CAZyme
Location: 41044 - 42057 (+)
Gene ID: HRGMv2_0184_23_24
Type: pfam
Location: 42245 - 43663 (-)
Type: pfam
Location: 42245 - 43663 (-)
Gene ID: HRGMv2_0184_23_25
Type: pfam
Location: 44359 - 45960 (-)
Type: pfam
Location: 44359 - 45960 (-)
Gene ID: HRGMv2_0184_23_26
Type: TC
Location: 46133 - 47572 (-)
Type: TC
Location: 46133 - 47572 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Coprobacteraceae
Genus
Coprobacter
Species
Coprobacter sp900545915
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.