Cluster: HRGMv2_0184_CGC40
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0184
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0184_16 | HRGMv2_0184_16_4 | 4079 | 5791 | + | 3.A.3.7.2 |
| TC | HRGMv2_0184_16 | HRGMv2_0184_16_5 | 5805 | 7841 | + | 3.A.3.7.2 |
| TC | HRGMv2_0184_16 | HRGMv2_0184_16_6 | 7858 | 8427 | + | 3.A.3.7.2 |
| NULL(UNKNOWN) | HRGMv2_0184_16 | HRGMv2_0184_16_7 | 8465 | 9214 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0184_16 | HRGMv2_0184_16_8 | 9307 | 10431 | + | KdpD |
| TC | HRGMv2_0184_16 | HRGMv2_0184_16_9 | 10458 | 12170 | + | 2.A.21.9.1 |
| pfam | HRGMv2_0184_16 | HRGMv2_0184_16_10 | 12752 | 19390 | + | DUF4465 | BNR_assoc_N | BNR_assoc_N | BNR_assoc_N |
| pfam | HRGMv2_0184_16 | HRGMv2_0184_16_11 | 19458 | 20126 | - | DUF2461 |
| TC | HRGMv2_0184_16 | HRGMv2_0184_16_12 | 20263 | 22242 | + | 2.A.67.4.2 |
| NULL(UNKNOWN) | HRGMv2_0184_16 | HRGMv2_0184_16_13 | 22321 | 22683 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0184_16 | HRGMv2_0184_16_14 | 23130 | 25742 | - | Kelch_KLHDC2_KLHL20_DRC7 |
| CAZyme | HRGMv2_0184_16 | HRGMv2_0184_16_15 | 26172 | 30023 | + | GH3 |
Gene ID: HRGMv2_0184_16_4
Type: TC
Location: 4079 - 5791 (+)
Type: TC
Location: 4079 - 5791 (+)
Gene ID: HRGMv2_0184_16_5
Type: TC
Location: 5805 - 7841 (+)
Type: TC
Location: 5805 - 7841 (+)
Gene ID: HRGMv2_0184_16_6
Type: TC
Location: 7858 - 8427 (+)
Type: TC
Location: 7858 - 8427 (+)
Gene ID: HRGMv2_0184_16_7
Type:
Location: 8465 - 9214 (+)
Type:
Location: 8465 - 9214 (+)
Gene ID: HRGMv2_0184_16_8
Type: pfam
Location: 9307 - 10431 (+)
Type: pfam
Location: 9307 - 10431 (+)
Gene ID: HRGMv2_0184_16_9
Type: TC
Location: 10458 - 12170 (+)
Type: TC
Location: 10458 - 12170 (+)
Gene ID: HRGMv2_0184_16_10
Type: pfam
Location: 12752 - 19390 (+)
Type: pfam
Location: 12752 - 19390 (+)
Gene ID: HRGMv2_0184_16_11
Type: pfam
Location: 19458 - 20126 (-)
Type: pfam
Location: 19458 - 20126 (-)
Gene ID: HRGMv2_0184_16_12
Type: TC
Location: 20263 - 22242 (+)
Type: TC
Location: 20263 - 22242 (+)
Gene ID: HRGMv2_0184_16_13
Type:
Location: 22321 - 22683 (-)
Type:
Location: 22321 - 22683 (-)
Gene ID: HRGMv2_0184_16_14
Type: pfam
Location: 23130 - 25742 (-)
Type: pfam
Location: 23130 - 25742 (-)
Gene ID: HRGMv2_0184_16_15
Type: CAZyme
Location: 26172 - 30023 (+)
Type: CAZyme
Location: 26172 - 30023 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Coprobacteraceae
Genus
Coprobacter
Species
Coprobacter sp900545915
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.