Cluster: HRGMv2_0184_CGC34
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_0184
- CGC Family ID: CGCFAM_07971
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0184_14 | HRGMv2_0184_14_1 | 3 | 611 | + | 9.B.168.1.2 |
| peptidase | HRGMv2_0184_14 | HRGMv2_0184_14_2 | 672 | 2465 | + | S01.UPB |
| CAZyme | HRGMv2_0184_14 | HRGMv2_0184_14_3 | 2612 | 4570 | + | PL17 |
| sulfatase | HRGMv2_0184_14 | HRGMv2_0184_14_4 | 4579 | 6345 | + | S1_36 |
| CAZyme | HRGMv2_0184_14 | HRGMv2_0184_14_5 | 6561 | 7790 | + | GH43_2 |
| CAZyme | HRGMv2_0184_14 | HRGMv2_0184_14_6 | 7815 | 10121 | + | GH92 |
| CAZyme | HRGMv2_0184_14 | HRGMv2_0184_14_7 | 10132 | 13038 | + | GH2 |
| pfam | HRGMv2_0184_14 | HRGMv2_0184_14_8 | 13279 | 14427 | + | FkbO_Hyg5-like_N |
| CAZyme | HRGMv2_0184_14 | HRGMv2_0184_14_9 | 14950 | 17964 | + | GH95 |
| pfam | HRGMv2_0184_14 | HRGMv2_0184_14_10 | 18177 | 18824 | + | Lipase_GDSL | Lipase_GDSL_2 |
| TC | HRGMv2_0184_14 | HRGMv2_0184_14_11 | 18906 | 21566 | + | 9.B.14.3.1 |
| pfam | HRGMv2_0184_14 | HRGMv2_0184_14_12 | 21558 | 22505 | - | EamA | EamA |
| TC | HRGMv2_0184_14 | HRGMv2_0184_14_13 | 22693 | 22854 | - | 3.D.7.2.3 |
| TF | HRGMv2_0184_14 | HRGMv2_0184_14_14 | 22911 | 23636 | - | LytTR |
| TC | HRGMv2_0184_14 | HRGMv2_0184_14_15 | 23633 | 24712 | - | 8.A.59.2.1 |
| TC | HRGMv2_0184_14 | HRGMv2_0184_14_16 | 24751 | 25971 | - | 3.A.1.122.1 |
| TC | HRGMv2_0184_14 | HRGMv2_0184_14_17 | 25984 | 26730 | - | 3.A.1.122.2 |
Gene ID: HRGMv2_0184_14_1
Type: TC
Location: 3 - 611 (+)
Type: TC
Location: 3 - 611 (+)
Gene ID: HRGMv2_0184_14_2
Type: peptidase
Location: 672 - 2465 (+)
Type: peptidase
Location: 672 - 2465 (+)
Gene ID: HRGMv2_0184_14_3
Type: CAZyme
Location: 2612 - 4570 (+)
Type: CAZyme
Location: 2612 - 4570 (+)
Gene ID: HRGMv2_0184_14_4
Type: sulfatase
Location: 4579 - 6345 (+)
Type: sulfatase
Location: 4579 - 6345 (+)
Gene ID: HRGMv2_0184_14_5
Type: CAZyme
Location: 6561 - 7790 (+)
Type: CAZyme
Location: 6561 - 7790 (+)
Gene ID: HRGMv2_0184_14_6
Type: CAZyme
Location: 7815 - 10121 (+)
Type: CAZyme
Location: 7815 - 10121 (+)
Gene ID: HRGMv2_0184_14_7
Type: CAZyme
Location: 10132 - 13038 (+)
Type: CAZyme
Location: 10132 - 13038 (+)
Gene ID: HRGMv2_0184_14_8
Type: pfam
Location: 13279 - 14427 (+)
Type: pfam
Location: 13279 - 14427 (+)
Gene ID: HRGMv2_0184_14_9
Type: CAZyme
Location: 14950 - 17964 (+)
Type: CAZyme
Location: 14950 - 17964 (+)
Gene ID: HRGMv2_0184_14_10
Type: pfam
Location: 18177 - 18824 (+)
Type: pfam
Location: 18177 - 18824 (+)
Gene ID: HRGMv2_0184_14_11
Type: TC
Location: 18906 - 21566 (+)
Type: TC
Location: 18906 - 21566 (+)
Gene ID: HRGMv2_0184_14_12
Type: pfam
Location: 21558 - 22505 (-)
Type: pfam
Location: 21558 - 22505 (-)
Gene ID: HRGMv2_0184_14_13
Type: TC
Location: 22693 - 22854 (-)
Type: TC
Location: 22693 - 22854 (-)
Gene ID: HRGMv2_0184_14_14
Type: TF
Location: 22911 - 23636 (-)
Type: TF
Location: 22911 - 23636 (-)
Gene ID: HRGMv2_0184_14_15
Type: TC
Location: 23633 - 24712 (-)
Type: TC
Location: 23633 - 24712 (-)
Gene ID: HRGMv2_0184_14_16
Type: TC
Location: 24751 - 25971 (-)
Type: TC
Location: 24751 - 25971 (-)
Gene ID: HRGMv2_0184_14_17
Type: TC
Location: 25984 - 26730 (-)
Type: TC
Location: 25984 - 26730 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Coprobacteraceae
Genus
Coprobacter
Species
Coprobacter sp900545915
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.