Cluster: HRGMv2_0184_CGC29
🧬 Cluster Details
- Gene Count: 20
- CAZyme Count: 8
- Substrate:
- Genome ID: HRGMv2_0184
- CGC Family ID: CGCFAM_05228
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0184_8 | HRGMv2_0184_8_23 | 18682 | 19146 | + | 9.A.24.1.7 |
| pfam | HRGMv2_0184_8 | HRGMv2_0184_8_24 | 19156 | 20160 | - | 2-Hacid_dh | 2-Hacid_dh_C | NAD_binding_2 |
| CAZyme | HRGMv2_0184_8 | HRGMv2_0184_8_25 | 20375 | 22321 | - | GH59 |
| CAZyme | HRGMv2_0184_8 | HRGMv2_0184_8_26 | 22318 | 23430 | - | GH105 |
| sulfatase | HRGMv2_0184_8 | HRGMv2_0184_8_27 | 23450 | 24976 | - | S1_16 |
| sulfatase | HRGMv2_0184_8 | HRGMv2_0184_8_28 | 24989 | 26743 | - | S1_36 |
| CAZyme | HRGMv2_0184_8 | HRGMv2_0184_8_29 | 26756 | 28339 | - | GH30_4 |
| CAZyme | HRGMv2_0184_8 | HRGMv2_0184_8_30 | 28352 | 30340 | - | GH2 |
| CAZyme | HRGMv2_0184_8 | HRGMv2_0184_8_31 | 30347 | 32296 | - | PL17 |
| sulfatase | HRGMv2_0184_8 | HRGMv2_0184_8_32 | 32309 | 33022 | - | S1_8 |
| CAZyme | HRGMv2_0184_8 | HRGMv2_0184_8_33 | 33035 | 35788 | - | GH2 |
| pfam | HRGMv2_0184_8 | HRGMv2_0184_8_34 | 35825 | 36697 | - | Exo_endo_phos |
| CAZyme | HRGMv2_0184_8 | HRGMv2_0184_8_35 | 36790 | 39963 | - | GH30_4 |
| NULL(UNKNOWN) | HRGMv2_0184_8 | HRGMv2_0184_8_36 | 40052 | 41134 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0184_8 | HRGMv2_0184_8_37 | 41154 | 42893 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0184_8 | HRGMv2_0184_8_38 | 42904 | 46062 | - | 1.B.14.6.1 |
| pfam | HRGMv2_0184_8 | HRGMv2_0184_8_39 | 46220 | 48025 | - | Por_Secre_tail |
| CAZyme | HRGMv2_0184_8 | HRGMv2_0184_8_40 | 48216 | 51017 | - | GH2 |
| STP | HRGMv2_0184_8 | HRGMv2_0184_8_41 | 51227 | 54568 | - | TPR_2 |
| TC | HRGMv2_0184_8 | HRGMv2_0184_8_42 | 54580 | 55965 | - | 2.A.1.1.55 |
Gene ID: HRGMv2_0184_8_23
Type: TC
Location: 18682 - 19146 (+)
Type: TC
Location: 18682 - 19146 (+)
Gene ID: HRGMv2_0184_8_24
Type: pfam
Location: 19156 - 20160 (-)
Type: pfam
Location: 19156 - 20160 (-)
Gene ID: HRGMv2_0184_8_25
Type: CAZyme
Location: 20375 - 22321 (-)
Type: CAZyme
Location: 20375 - 22321 (-)
Gene ID: HRGMv2_0184_8_26
Type: CAZyme
Location: 22318 - 23430 (-)
Type: CAZyme
Location: 22318 - 23430 (-)
Gene ID: HRGMv2_0184_8_27
Type: sulfatase
Location: 23450 - 24976 (-)
Type: sulfatase
Location: 23450 - 24976 (-)
Gene ID: HRGMv2_0184_8_28
Type: sulfatase
Location: 24989 - 26743 (-)
Type: sulfatase
Location: 24989 - 26743 (-)
Gene ID: HRGMv2_0184_8_29
Type: CAZyme
Location: 26756 - 28339 (-)
Type: CAZyme
Location: 26756 - 28339 (-)
Gene ID: HRGMv2_0184_8_30
Type: CAZyme
Location: 28352 - 30340 (-)
Type: CAZyme
Location: 28352 - 30340 (-)
Gene ID: HRGMv2_0184_8_31
Type: CAZyme
Location: 30347 - 32296 (-)
Type: CAZyme
Location: 30347 - 32296 (-)
Gene ID: HRGMv2_0184_8_32
Type: sulfatase
Location: 32309 - 33022 (-)
Type: sulfatase
Location: 32309 - 33022 (-)
Gene ID: HRGMv2_0184_8_33
Type: CAZyme
Location: 33035 - 35788 (-)
Type: CAZyme
Location: 33035 - 35788 (-)
Gene ID: HRGMv2_0184_8_34
Type: pfam
Location: 35825 - 36697 (-)
Type: pfam
Location: 35825 - 36697 (-)
Gene ID: HRGMv2_0184_8_35
Type: CAZyme
Location: 36790 - 39963 (-)
Type: CAZyme
Location: 36790 - 39963 (-)
Gene ID: HRGMv2_0184_8_36
Type:
Location: 40052 - 41134 (-)
Type:
Location: 40052 - 41134 (-)
Gene ID: HRGMv2_0184_8_37
Type: pfam
Location: 41154 - 42893 (-)
Type: pfam
Location: 41154 - 42893 (-)
Gene ID: HRGMv2_0184_8_38
Type: TC
Location: 42904 - 46062 (-)
Type: TC
Location: 42904 - 46062 (-)
Gene ID: HRGMv2_0184_8_39
Type: pfam
Location: 46220 - 48025 (-)
Type: pfam
Location: 46220 - 48025 (-)
Gene ID: HRGMv2_0184_8_40
Type: CAZyme
Location: 48216 - 51017 (-)
Type: CAZyme
Location: 48216 - 51017 (-)
Gene ID: HRGMv2_0184_8_41
Type: STP
Location: 51227 - 54568 (-)
Type: STP
Location: 51227 - 54568 (-)
Gene ID: HRGMv2_0184_8_42
Type: TC
Location: 54580 - 55965 (-)
Type: TC
Location: 54580 - 55965 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Coprobacteraceae
Genus
Coprobacter
Species
Coprobacter sp900545915
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.