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Cluster: HRGMv2_0184_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0184_5 HRGMv2_0184_5_47 52853 54088 - 9.B.1.1.3
pfam HRGMv2_0184_5 HRGMv2_0184_5_48 54101 55123 - TsaD
pfam HRGMv2_0184_5 HRGMv2_0184_5_49 55266 59810 + TamB
CAZyme HRGMv2_0184_5 HRGMv2_0184_5_50 59937 61112 - GT2
pfam HRGMv2_0184_5 HRGMv2_0184_5_51 61416 62219 + Poly_export | SLBB_2
TC HRGMv2_0184_5 HRGMv2_0184_5_52 62251 64581 + 8.A.3.3.4
pfam HRGMv2_0184_5 HRGMv2_0184_5_53 64578 65792 + Wzy_C
CAZyme HRGMv2_0184_5 HRGMv2_0184_5_54 65797 66921 - GT4
CAZyme HRGMv2_0184_5 HRGMv2_0184_5_55 67504 68769 + GT4
pfam HRGMv2_0184_5 HRGMv2_0184_5_56 68970 69668 + Hexapep | Hexapep_2
pfam HRGMv2_0184_5 HRGMv2_0184_5_57 69747 70811 + Radical_SAM | SPASM
CAZyme HRGMv2_0184_5 HRGMv2_0184_5_58 70897 72012 + GT4
Gene ID: HRGMv2_0184_5_47
Type: TC
Location: 52853 - 54088 (-)
Gene ID: HRGMv2_0184_5_48
Type: pfam
Location: 54101 - 55123 (-)
Gene ID: HRGMv2_0184_5_49
Type: pfam
Location: 55266 - 59810 (+)
Gene ID: HRGMv2_0184_5_50
Type: CAZyme
Location: 59937 - 61112 (-)
Gene ID: HRGMv2_0184_5_51
Type: pfam
Location: 61416 - 62219 (+)
Gene ID: HRGMv2_0184_5_52
Type: TC
Location: 62251 - 64581 (+)
Gene ID: HRGMv2_0184_5_53
Type: pfam
Location: 64578 - 65792 (+)
Gene ID: HRGMv2_0184_5_54
Type: CAZyme
Location: 65797 - 66921 (-)
Gene ID: HRGMv2_0184_5_55
Type: CAZyme
Location: 67504 - 68769 (+)
Gene ID: HRGMv2_0184_5_56
Type: pfam
Location: 68970 - 69668 (+)
Gene ID: HRGMv2_0184_5_57
Type: pfam
Location: 69747 - 70811 (+)
Gene ID: HRGMv2_0184_5_58
Type: CAZyme
Location: 70897 - 72012 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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