Cluster: HRGMv2_0177_CGC39
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 8
- Substrate: pectin
- Genome ID: HRGMv2_0177
- CGC Family ID: CGCFAM_00540
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0177_44 | HRGMv2_0177_44_120 | 158742 | 160256 | - | 2.A.1.14.25 |
| CAZyme | HRGMv2_0177_44 | HRGMv2_0177_44_121 | 160544 | 161743 | + | GH105 |
| CAZyme | HRGMv2_0177_44 | HRGMv2_0177_44_122 | 161743 | 162699 | + | CE8 |
| pfam | HRGMv2_0177_44 | HRGMv2_0177_44_123 | 163009 | 163350 | - | AraC_binding | Cupin_2 |
| CAZyme | HRGMv2_0177_44 | HRGMv2_0177_44_124 | 163472 | 165199 | + | CE12 | CE8 |
| CAZyme | HRGMv2_0177_44 | HRGMv2_0177_44_125 | 165214 | 166365 | + | CE19 |
| TF | HRGMv2_0177_44 | HRGMv2_0177_44_126 | 167160 | 171653 | + | HTH_AraC |
| TC | HRGMv2_0177_44 | HRGMv2_0177_44_127 | 171893 | 175093 | + | 1.B.14.6.1 |
| sulfatase | HRGMv2_0177_44 | HRGMv2_0177_44_128 | 175106 | 177130 | + | S1_27 |
| pfam | HRGMv2_0177_44 | HRGMv2_0177_44_129 | 177151 | 178797 | + | DUF5123 |
| CAZyme | HRGMv2_0177_44 | HRGMv2_0177_44_130 | 178992 | 180563 | + | PL1_2 |
| CAZyme | HRGMv2_0177_44 | HRGMv2_0177_44_131 | 180974 | 184297 | + | CE8 |
| NULL(UNKNOWN) | HRGMv2_0177_44 | HRGMv2_0177_44_132 | 184668 | 184943 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_0177_44 | HRGMv2_0177_44_133 | 184940 | 185278 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0177_44 | HRGMv2_0177_44_134 | 185626 | 188229 | - | GH3 |
| TF | HRGMv2_0177_44 | HRGMv2_0177_44_135 | 188409 | 192776 | - | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_0177_44 | HRGMv2_0177_44_136 | 192974 | 194512 | + | GH28 |
Gene ID: HRGMv2_0177_44_120
Type: TC
Location: 158742 - 160256 (-)
Type: TC
Location: 158742 - 160256 (-)
Gene ID: HRGMv2_0177_44_121
Type: CAZyme
Location: 160544 - 161743 (+)
Type: CAZyme
Location: 160544 - 161743 (+)
Gene ID: HRGMv2_0177_44_122
Type: CAZyme
Location: 161743 - 162699 (+)
Type: CAZyme
Location: 161743 - 162699 (+)
Gene ID: HRGMv2_0177_44_123
Type: pfam
Location: 163009 - 163350 (-)
Type: pfam
Location: 163009 - 163350 (-)
Gene ID: HRGMv2_0177_44_124
Type: CAZyme
Location: 163472 - 165199 (+)
Type: CAZyme
Location: 163472 - 165199 (+)
Gene ID: HRGMv2_0177_44_125
Type: CAZyme
Location: 165214 - 166365 (+)
Type: CAZyme
Location: 165214 - 166365 (+)
Gene ID: HRGMv2_0177_44_126
Type: TF
Location: 167160 - 171653 (+)
Type: TF
Location: 167160 - 171653 (+)
Gene ID: HRGMv2_0177_44_127
Type: TC
Location: 171893 - 175093 (+)
Type: TC
Location: 171893 - 175093 (+)
Gene ID: HRGMv2_0177_44_128
Type: sulfatase
Location: 175106 - 177130 (+)
Type: sulfatase
Location: 175106 - 177130 (+)
Gene ID: HRGMv2_0177_44_129
Type: pfam
Location: 177151 - 178797 (+)
Type: pfam
Location: 177151 - 178797 (+)
Gene ID: HRGMv2_0177_44_130
Type: CAZyme
Location: 178992 - 180563 (+)
Type: CAZyme
Location: 178992 - 180563 (+)
Gene ID: HRGMv2_0177_44_131
Type: CAZyme
Location: 180974 - 184297 (+)
Type: CAZyme
Location: 180974 - 184297 (+)
Gene ID: HRGMv2_0177_44_132
Type:
Location: 184668 - 184943 (+)
Type:
Location: 184668 - 184943 (+)
Gene ID: HRGMv2_0177_44_133
Type:
Location: 184940 - 185278 (+)
Type:
Location: 184940 - 185278 (+)
Gene ID: HRGMv2_0177_44_134
Type: CAZyme
Location: 185626 - 188229 (-)
Type: CAZyme
Location: 185626 - 188229 (-)
Gene ID: HRGMv2_0177_44_135
Type: TF
Location: 188409 - 192776 (-)
Type: TF
Location: 188409 - 192776 (-)
Gene ID: HRGMv2_0177_44_136
Type: CAZyme
Location: 192974 - 194512 (+)
Type: CAZyme
Location: 192974 - 194512 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp900762525
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0177_44_123 | vegan > omnivore | 2.29641 | 0.03762 |