Cluster: HRGMv2_0171_CGC5
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_0171
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0171_1 | HRGMv2_0171_1_183 | 227713 | 228876 | + | 2.A.23.2.7 |
| pfam | HRGMv2_0171_1 | HRGMv2_0171_1_184 | 228857 | 229390 | - | Lysine_decarbox | LDcluster4 |
| TC | HRGMv2_0171_1 | HRGMv2_0171_1_185 | 231911 | 233779 | - | 3.A.18.1.1 |
| CAZyme | HRGMv2_0171_1 | HRGMv2_0171_1_186 | 235441 | 236538 | - | GT4 |
| pfam | HRGMv2_0171_1 | HRGMv2_0171_1_187 | 236564 | 237070 | - | C_GCAxxG_C_C |
| peptidase | HRGMv2_0171_1 | HRGMv2_0171_1_188 | 237080 | 238378 | - | M18.UPW |
| CAZyme | HRGMv2_0171_1 | HRGMv2_0171_1_189 | 238595 | 241096 | + | GH95 |
| pfam | HRGMv2_0171_1 | HRGMv2_0171_1_190 | 241439 | 242251 | + | YhcG_C | DUF1016_N |
| NULL(UNKNOWN) | HRGMv2_0171_1 | HRGMv2_0171_1_191 | 242253 | 242369 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0171_1 | HRGMv2_0171_1_192 | 242523 | 244853 | - | GH3 |
| CAZyme | HRGMv2_0171_1 | HRGMv2_0171_1_193 | 244876 | 246690 | - | GH29 |
Gene ID: HRGMv2_0171_1_183
Type: TC
Location: 227713 - 228876 (+)
Type: TC
Location: 227713 - 228876 (+)
Gene ID: HRGMv2_0171_1_184
Type: pfam
Location: 228857 - 229390 (-)
Type: pfam
Location: 228857 - 229390 (-)
Gene ID: HRGMv2_0171_1_185
Type: TC
Location: 231911 - 233779 (-)
Type: TC
Location: 231911 - 233779 (-)
Gene ID: HRGMv2_0171_1_186
Type: CAZyme
Location: 235441 - 236538 (-)
Type: CAZyme
Location: 235441 - 236538 (-)
Gene ID: HRGMv2_0171_1_187
Type: pfam
Location: 236564 - 237070 (-)
Type: pfam
Location: 236564 - 237070 (-)
Gene ID: HRGMv2_0171_1_188
Type: peptidase
Location: 237080 - 238378 (-)
Type: peptidase
Location: 237080 - 238378 (-)
Gene ID: HRGMv2_0171_1_189
Type: CAZyme
Location: 238595 - 241096 (+)
Type: CAZyme
Location: 238595 - 241096 (+)
Gene ID: HRGMv2_0171_1_190
Type: pfam
Location: 241439 - 242251 (+)
Type: pfam
Location: 241439 - 242251 (+)
Gene ID: HRGMv2_0171_1_191
Type:
Location: 242253 - 242369 (+)
Type:
Location: 242253 - 242369 (+)
Gene ID: HRGMv2_0171_1_192
Type: CAZyme
Location: 242523 - 244853 (-)
Type: CAZyme
Location: 242523 - 244853 (-)
Gene ID: HRGMv2_0171_1_193
Type: CAZyme
Location: 244876 - 246690 (-)
Type: CAZyme
Location: 244876 - 246690 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp002251385
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0171_1_190 | vegan > omnivore | 2.41032 | 0.02464 |
| HRGMv2_0171_1_190 | vegetarian > omnivore | 2.45054 | 0.03761 |