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Cluster: HRGMv2_0171_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0171_4 HRGMv2_0171_4_41 44292 46349 - GH20
pfam HRGMv2_0171_4 HRGMv2_0171_4_42 46377 50846 - TamB | DUF748
pfam HRGMv2_0171_4 HRGMv2_0171_4_43 50993 52342 + NQRA_N | NQRA_SLBB | NQRA_2nd
TC HRGMv2_0171_4 HRGMv2_0171_4_44 52346 53500 + 3.D.5.1.1
TC HRGMv2_0171_4 HRGMv2_0171_4_45 53512 54219 + 3.D.5.1.1
TC HRGMv2_0171_4 HRGMv2_0171_4_46 54244 54867 + 3.D.5.1.1
TC HRGMv2_0171_4 HRGMv2_0171_4_47 54874 55500 + 3.D.5.1.1
TC HRGMv2_0171_4 HRGMv2_0171_4_48 55519 56787 + 3.D.5.1.1
pfam HRGMv2_0171_4 HRGMv2_0171_4_49 57058 58317 + Beta_helix
pfam HRGMv2_0171_4 HRGMv2_0171_4_50 58320 58802 + dCMP_cyt_deam_1 | dCMP_cyt_deam_2
TC HRGMv2_0171_4 HRGMv2_0171_4_51 58810 59997 - 2.A.1.46.5
Gene ID: HRGMv2_0171_4_41
Type: CAZyme
Location: 44292 - 46349 (-)
Gene ID: HRGMv2_0171_4_42
Type: pfam
Location: 46377 - 50846 (-)
Gene ID: HRGMv2_0171_4_43
Type: pfam
Location: 50993 - 52342 (+)
Gene ID: HRGMv2_0171_4_44
Type: TC
Location: 52346 - 53500 (+)
Gene ID: HRGMv2_0171_4_45
Type: TC
Location: 53512 - 54219 (+)
Gene ID: HRGMv2_0171_4_46
Type: TC
Location: 54244 - 54867 (+)
Gene ID: HRGMv2_0171_4_47
Type: TC
Location: 54874 - 55500 (+)
Gene ID: HRGMv2_0171_4_48
Type: TC
Location: 55519 - 56787 (+)
Gene ID: HRGMv2_0171_4_49
Type: pfam
Location: 57058 - 58317 (+)
Gene ID: HRGMv2_0171_4_50
Type: pfam
Location: 58320 - 58802 (+)
Gene ID: HRGMv2_0171_4_51
Type: TC
Location: 58810 - 59997 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0171_4_47 vegan > omnivore 1.03370 0.02464

🧭 Explore Read Mapping of CGC

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