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Cluster: HRGMv2_0170_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0170_13 HRGMv2_0170_13_9 8486 9301 + GT5
pfam HRGMv2_0170_13 HRGMv2_0170_13_10 9411 10859 + DUF4270
TC HRGMv2_0170_13 HRGMv2_0170_13_11 11099 13666 + 3.A.9.1.2
sulfatase HRGMv2_0170_13 HRGMv2_0170_13_12 13795 15906 - S1_25
TC HRGMv2_0170_13 HRGMv2_0170_13_13 16313 17839 - 2.A.17.1.6
pfam HRGMv2_0170_13 HRGMv2_0170_13_14 17937 18752 - OMP_b-brl_2
CAZyme HRGMv2_0170_13 HRGMv2_0170_13_15 18768 20192 - CBM50
pfam HRGMv2_0170_13 HRGMv2_0170_13_16 20293 21015 + CHU_C
pfam HRGMv2_0170_13 HRGMv2_0170_13_17 21057 23918 + UvrA_DNA-bind | UvrA_inter
TC HRGMv2_0170_13 HRGMv2_0170_13_18 24390 25670 - 9.B.10.1.1
Gene ID: HRGMv2_0170_13_9
Type: CAZyme
Location: 8486 - 9301 (+)
Gene ID: HRGMv2_0170_13_10
Type: pfam
Location: 9411 - 10859 (+)
Gene ID: HRGMv2_0170_13_11
Type: TC
Location: 11099 - 13666 (+)
Gene ID: HRGMv2_0170_13_12
Type: sulfatase
Location: 13795 - 15906 (-)
Gene ID: HRGMv2_0170_13_13
Type: TC
Location: 16313 - 17839 (-)
Gene ID: HRGMv2_0170_13_14
Type: pfam
Location: 17937 - 18752 (-)
Gene ID: HRGMv2_0170_13_15
Type: CAZyme
Location: 18768 - 20192 (-)
Gene ID: HRGMv2_0170_13_16
Type: pfam
Location: 20293 - 21015 (+)
Gene ID: HRGMv2_0170_13_17
Type: pfam
Location: 21057 - 23918 (+)
Gene ID: HRGMv2_0170_13_18
Type: TC
Location: 24390 - 25670 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0170_13_13 vegetarian > omnivore 1.23721 0.04099

🧭 Explore Read Mapping of CGC

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