Cluster: HRGMv2_0170_CGC10
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_0170
- CGC Family ID: CGCFAM_00034
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0170_6 | HRGMv2_0170_6_184 | 253575 | 254678 | + | 3.A.1.132.3 |
| NULL(UNKNOWN) | HRGMv2_0170_6 | HRGMv2_0170_6_185 | 254848 | 255846 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0170_6 | HRGMv2_0170_6_186 | 256136 | 258880 | + | GH77 |
| CAZyme | HRGMv2_0170_6 | HRGMv2_0170_6_187 | 259131 | 261266 | + | GH97 |
| CAZyme | HRGMv2_0170_6 | HRGMv2_0170_6_188 | 261473 | 263386 | + | GH13_14 |
| CAZyme | HRGMv2_0170_6 | HRGMv2_0170_6_189 | 263521 | 265371 | + | GH13_46 |
| CAZyme | HRGMv2_0170_6 | HRGMv2_0170_6_190 | 265457 | 266743 | + | GH53 |
| pfam | HRGMv2_0170_6 | HRGMv2_0170_6_191 | 267074 | 267691 | + | FAA_hydrolase |
| peptidase | HRGMv2_0170_6 | HRGMv2_0170_6_192 | 268669 | 272418 | + | C56.972 |
| TC | HRGMv2_0170_6 | HRGMv2_0170_6_193 | 272648 | 273190 | + | 2.A.51.1.6 |
| TC | HRGMv2_0170_6 | HRGMv2_0170_6_194 | 273218 | 273793 | + | 2.A.51.1.6 |
| CAZyme | HRGMv2_0170_6 | HRGMv2_0170_6_195 | 273995 | 275998 | - | GH13_7 |
| NULL(UNKNOWN) | HRGMv2_0170_6 | HRGMv2_0170_6_196 | 276327 | 277727 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0170_6 | HRGMv2_0170_6_197 | 277801 | 279000 | - | SusE | SusF_SusE |
| TC | HRGMv2_0170_6 | HRGMv2_0170_6_198 | 279079 | 280692 | - | 8.A.46.1.1 |
| TC | HRGMv2_0170_6 | HRGMv2_0170_6_199 | 280717 | 283860 | - | 1.B.14.6.1 |
| TF | HRGMv2_0170_6 | HRGMv2_0170_6_200 | 284151 | 285176 | + | LacI |
| TC | HRGMv2_0170_6 | HRGMv2_0170_6_201 | 285232 | 286557 | + | 2.A.2.6.2 |
Gene ID: HRGMv2_0170_6_184
Type: TC
Location: 253575 - 254678 (+)
Type: TC
Location: 253575 - 254678 (+)
Gene ID: HRGMv2_0170_6_185
Type:
Location: 254848 - 255846 (+)
Type:
Location: 254848 - 255846 (+)
Gene ID: HRGMv2_0170_6_186
Type: CAZyme
Location: 256136 - 258880 (+)
Type: CAZyme
Location: 256136 - 258880 (+)
Gene ID: HRGMv2_0170_6_187
Type: CAZyme
Location: 259131 - 261266 (+)
Type: CAZyme
Location: 259131 - 261266 (+)
Gene ID: HRGMv2_0170_6_188
Type: CAZyme
Location: 261473 - 263386 (+)
Type: CAZyme
Location: 261473 - 263386 (+)
Gene ID: HRGMv2_0170_6_189
Type: CAZyme
Location: 263521 - 265371 (+)
Type: CAZyme
Location: 263521 - 265371 (+)
Gene ID: HRGMv2_0170_6_190
Type: CAZyme
Location: 265457 - 266743 (+)
Type: CAZyme
Location: 265457 - 266743 (+)
Gene ID: HRGMv2_0170_6_191
Type: pfam
Location: 267074 - 267691 (+)
Type: pfam
Location: 267074 - 267691 (+)
Gene ID: HRGMv2_0170_6_192
Type: peptidase
Location: 268669 - 272418 (+)
Type: peptidase
Location: 268669 - 272418 (+)
Gene ID: HRGMv2_0170_6_193
Type: TC
Location: 272648 - 273190 (+)
Type: TC
Location: 272648 - 273190 (+)
Gene ID: HRGMv2_0170_6_194
Type: TC
Location: 273218 - 273793 (+)
Type: TC
Location: 273218 - 273793 (+)
Gene ID: HRGMv2_0170_6_195
Type: CAZyme
Location: 273995 - 275998 (-)
Type: CAZyme
Location: 273995 - 275998 (-)
Gene ID: HRGMv2_0170_6_196
Type:
Location: 276327 - 277727 (-)
Type:
Location: 276327 - 277727 (-)
Gene ID: HRGMv2_0170_6_197
Type: pfam
Location: 277801 - 279000 (-)
Type: pfam
Location: 277801 - 279000 (-)
Gene ID: HRGMv2_0170_6_198
Type: TC
Location: 279079 - 280692 (-)
Type: TC
Location: 279079 - 280692 (-)
Gene ID: HRGMv2_0170_6_199
Type: TC
Location: 280717 - 283860 (-)
Type: TC
Location: 280717 - 283860 (-)
Gene ID: HRGMv2_0170_6_200
Type: TF
Location: 284151 - 285176 (+)
Type: TF
Location: 284151 - 285176 (+)
Gene ID: HRGMv2_0170_6_201
Type: TC
Location: 285232 - 286557 (+)
Type: TC
Location: 285232 - 286557 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp003447235
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.