Cluster: HRGMv2_0168_CGC1
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0168
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0168_1 | HRGMv2_0168_1_57 | 68109 | 69023 | + | 2.A.124.1.2 |
| CAZyme | HRGMv2_0168_1 | HRGMv2_0168_1_58 | 69079 | 70422 | - | GH144 |
| CAZyme | HRGMv2_0168_1 | HRGMv2_0168_1_59 | 70433 | 72718 | - | GH3 |
| CAZyme | HRGMv2_0168_1 | HRGMv2_0168_1_60 | 72805 | 74481 | - | GH144 |
| pfam | HRGMv2_0168_1 | HRGMv2_0168_1_61 | 74555 | 75418 | - | Laminin_G_3 |
| pfam | HRGMv2_0168_1 | HRGMv2_0168_1_62 | 75434 | 77014 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0168_1 | HRGMv2_0168_1_63 | 77028 | 80075 | - | 1.B.14.6.2 |
Gene ID: HRGMv2_0168_1_57
Type: TC
Location: 68109 - 69023 (+)
Type: TC
Location: 68109 - 69023 (+)
Gene ID: HRGMv2_0168_1_58
Type: CAZyme
Location: 69079 - 70422 (-)
Type: CAZyme
Location: 69079 - 70422 (-)
Gene ID: HRGMv2_0168_1_59
Type: CAZyme
Location: 70433 - 72718 (-)
Type: CAZyme
Location: 70433 - 72718 (-)
Gene ID: HRGMv2_0168_1_60
Type: CAZyme
Location: 72805 - 74481 (-)
Type: CAZyme
Location: 72805 - 74481 (-)
Gene ID: HRGMv2_0168_1_61
Type: pfam
Location: 74555 - 75418 (-)
Type: pfam
Location: 74555 - 75418 (-)
Gene ID: HRGMv2_0168_1_62
Type: pfam
Location: 75434 - 77014 (-)
Type: pfam
Location: 75434 - 77014 (-)
Gene ID: HRGMv2_0168_1_63
Type: TC
Location: 77028 - 80075 (-)
Type: TC
Location: 77028 - 80075 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes communis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.