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Cluster: HRGMv2_0162_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0162_9 HRGMv2_0162_9_6 5046 7370 + GT51
pfam HRGMv2_0162_9 HRGMv2_0162_9_7 7415 8281 + MTS | PrmA | Methyltransf_11 | Methyltransf_25 | Methyltransf_31
TF HRGMv2_0162_9 HRGMv2_0162_9_8 8394 12449 + HTH_AraC
CAZyme HRGMv2_0162_9 HRGMv2_0162_9_9 12619 13842 + GH5_4
TC HRGMv2_0162_9 HRGMv2_0162_9_10 13893 17069 + 1.B.14.6.2
pfam HRGMv2_0162_9 HRGMv2_0162_9_11 17128 18903 + SusD-like | SusD-like | SusD-like_2 | SusD-like_2
NULL(UNKNOWN) HRGMv2_0162_9 HRGMv2_0162_9_12 18949 19947 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0162_9 HRGMv2_0162_9_13 19999 22332 + GH3
Gene ID: HRGMv2_0162_9_6
Type: CAZyme
Location: 5046 - 7370 (+)
Gene ID: HRGMv2_0162_9_7
Type: pfam
Location: 7415 - 8281 (+)
Gene ID: HRGMv2_0162_9_8
Type: TF
Location: 8394 - 12449 (+)
Gene ID: HRGMv2_0162_9_9
Type: CAZyme
Location: 12619 - 13842 (+)
Gene ID: HRGMv2_0162_9_10
Type: TC
Location: 13893 - 17069 (+)
Gene ID: HRGMv2_0162_9_11
Type: pfam
Location: 17128 - 18903 (+)
Gene ID: HRGMv2_0162_9_12
Type:
Location: 18949 - 19947 (+)
Gene ID: HRGMv2_0162_9_13
Type: CAZyme
Location: 19999 - 22332 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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