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Cluster: HRGMv2_0160_CGC42

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0160_43 HRGMv2_0160_43_5 6753 7529 - 3.A.1.27.4
TC HRGMv2_0160_43 HRGMv2_0160_43_6 7532 8230 - 3.A.1.27.1
TC HRGMv2_0160_43 HRGMv2_0160_43_7 8393 9238 + 1.B.42.1.2
CAZyme HRGMv2_0160_43 HRGMv2_0160_43_8 9569 11911 + GH31_9
CAZyme HRGMv2_0160_43 HRGMv2_0160_43_9 11908 13881 + CE19
TF HRGMv2_0160_43 HRGMv2_0160_43_10 14158 14703 + GerE
STP HRGMv2_0160_43 HRGMv2_0160_43_11 14727 15653 + FecR
TC HRGMv2_0160_43 HRGMv2_0160_43_12 15788 16726 + 1.B.14.6.1
TC HRGMv2_0160_43 HRGMv2_0160_43_13 16778 19186 + 1.B.14.6.1
TC HRGMv2_0160_43 HRGMv2_0160_43_14 19206 20669 + 8.A.46.1.4
CAZyme HRGMv2_0160_43 HRGMv2_0160_43_15 20777 22300 + CBM91 | GH43_10
Gene ID: HRGMv2_0160_43_5
Type: TC
Location: 6753 - 7529 (-)
Gene ID: HRGMv2_0160_43_6
Type: TC
Location: 7532 - 8230 (-)
Gene ID: HRGMv2_0160_43_7
Type: TC
Location: 8393 - 9238 (+)
Gene ID: HRGMv2_0160_43_8
Type: CAZyme
Location: 9569 - 11911 (+)
Gene ID: HRGMv2_0160_43_9
Type: CAZyme
Location: 11908 - 13881 (+)
Gene ID: HRGMv2_0160_43_10
Type: TF
Location: 14158 - 14703 (+)
Gene ID: HRGMv2_0160_43_11
Type: STP
Location: 14727 - 15653 (+)
Gene ID: HRGMv2_0160_43_12
Type: TC
Location: 15788 - 16726 (+)
Gene ID: HRGMv2_0160_43_13
Type: TC
Location: 16778 - 19186 (+)
Gene ID: HRGMv2_0160_43_14
Type: TC
Location: 19206 - 20669 (+)
Gene ID: HRGMv2_0160_43_15
Type: CAZyme
Location: 20777 - 22300 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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