Cluster: HRGMv2_0160_CGC41
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_0160
- CGC Family ID: CGCFAM_09086
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0160_42 | HRGMv2_0160_42_11 | 13189 | 13965 | - | GT2 |
| CAZyme | HRGMv2_0160_42 | HRGMv2_0160_42_12 | 14095 | 14802 | - | GT2 |
| pfam | HRGMv2_0160_42 | HRGMv2_0160_42_13 | 14799 | 16031 | - | Glyco_trans_1_2 | Glyco_trans_1_4 |
| CAZyme | HRGMv2_0160_42 | HRGMv2_0160_42_14 | 16070 | 16987 | - | GT14 |
| pfam | HRGMv2_0160_42 | HRGMv2_0160_42_15 | 17021 | 18175 | - | EpsG |
| pfam | HRGMv2_0160_42 | HRGMv2_0160_42_16 | 18201 | 19418 | - | Wzz |
| CAZyme | HRGMv2_0160_42 | HRGMv2_0160_42_17 | 19529 | 20293 | - | GT32 |
| pfam | HRGMv2_0160_42 | HRGMv2_0160_42_18 | 20298 | 21737 | - | Polysacc_synt | Polysacc_synt_3 |
| CAZyme | HRGMv2_0160_42 | HRGMv2_0160_42_19 | 21775 | 23043 | - | GT2 |
| CAZyme | HRGMv2_0160_42 | HRGMv2_0160_42_20 | 23051 | 24856 | - | GH163 |
| pfam | HRGMv2_0160_42 | HRGMv2_0160_42_21 | 24875 | 27508 | - | Poly_export | SLBB | SLBB | SLBB | SLBB | SLBB | SLBB_2 | SLBB_2 |
| TC | HRGMv2_0160_42 | HRGMv2_0160_42_22 | 27728 | 28375 | - | 9.B.18.1.3 |
Gene ID: HRGMv2_0160_42_11
Type: CAZyme
Location: 13189 - 13965 (-)
Type: CAZyme
Location: 13189 - 13965 (-)
Gene ID: HRGMv2_0160_42_12
Type: CAZyme
Location: 14095 - 14802 (-)
Type: CAZyme
Location: 14095 - 14802 (-)
Gene ID: HRGMv2_0160_42_13
Type: pfam
Location: 14799 - 16031 (-)
Type: pfam
Location: 14799 - 16031 (-)
Gene ID: HRGMv2_0160_42_14
Type: CAZyme
Location: 16070 - 16987 (-)
Type: CAZyme
Location: 16070 - 16987 (-)
Gene ID: HRGMv2_0160_42_15
Type: pfam
Location: 17021 - 18175 (-)
Type: pfam
Location: 17021 - 18175 (-)
Gene ID: HRGMv2_0160_42_16
Type: pfam
Location: 18201 - 19418 (-)
Type: pfam
Location: 18201 - 19418 (-)
Gene ID: HRGMv2_0160_42_17
Type: CAZyme
Location: 19529 - 20293 (-)
Type: CAZyme
Location: 19529 - 20293 (-)
Gene ID: HRGMv2_0160_42_18
Type: pfam
Location: 20298 - 21737 (-)
Type: pfam
Location: 20298 - 21737 (-)
Gene ID: HRGMv2_0160_42_19
Type: CAZyme
Location: 21775 - 23043 (-)
Type: CAZyme
Location: 21775 - 23043 (-)
Gene ID: HRGMv2_0160_42_20
Type: CAZyme
Location: 23051 - 24856 (-)
Type: CAZyme
Location: 23051 - 24856 (-)
Gene ID: HRGMv2_0160_42_21
Type: pfam
Location: 24875 - 27508 (-)
Type: pfam
Location: 24875 - 27508 (-)
Gene ID: HRGMv2_0160_42_22
Type: TC
Location: 27728 - 28375 (-)
Type: TC
Location: 27728 - 28375 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp002480935
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.