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Cluster: HRGMv2_0160_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0160_22 HRGMv2_0160_22_25 33544 34998 - 2.A.38.1.3
TC HRGMv2_0160_22 HRGMv2_0160_22_26 35005 36345 - 2.A.38.1.1
pfam HRGMv2_0160_22 HRGMv2_0160_22_27 36342 38261 - TPP_enzyme_C | Transket_pyr | Transketolase_C | DXP_synthase_N
CAZyme HRGMv2_0160_22 HRGMv2_0160_22_28 38693 39910 - GT19
pfam HRGMv2_0160_22 HRGMv2_0160_22_29 39907 40689 - SurE
TC HRGMv2_0160_22 HRGMv2_0160_22_30 40760 41578 + 8.A.3.2.3
pfam HRGMv2_0160_22 HRGMv2_0160_22_31 41585 42493 + ParBc | HTH_ParB | ParB_dimer
pfam HRGMv2_0160_22 HRGMv2_0160_22_32 42535 43269 + DUF5683
CAZyme HRGMv2_0160_22 HRGMv2_0160_22_33 43318 44661 + GH23
STP HRGMv2_0160_22 HRGMv2_0160_22_34 44695 46965 + HD
CAZyme HRGMv2_0160_22 HRGMv2_0160_22_35 46970 47953 + CE8
Gene ID: HRGMv2_0160_22_25
Type: TC
Location: 33544 - 34998 (-)
Gene ID: HRGMv2_0160_22_26
Type: TC
Location: 35005 - 36345 (-)
Gene ID: HRGMv2_0160_22_27
Type: pfam
Location: 36342 - 38261 (-)
Gene ID: HRGMv2_0160_22_28
Type: CAZyme
Location: 38693 - 39910 (-)
Gene ID: HRGMv2_0160_22_29
Type: pfam
Location: 39907 - 40689 (-)
Gene ID: HRGMv2_0160_22_30
Type: TC
Location: 40760 - 41578 (+)
Gene ID: HRGMv2_0160_22_31
Type: pfam
Location: 41585 - 42493 (+)
Gene ID: HRGMv2_0160_22_32
Type: pfam
Location: 42535 - 43269 (+)
Gene ID: HRGMv2_0160_22_33
Type: CAZyme
Location: 43318 - 44661 (+)
Gene ID: HRGMv2_0160_22_34
Type: STP
Location: 44695 - 46965 (+)
Gene ID: HRGMv2_0160_22_35
Type: CAZyme
Location: 46970 - 47953 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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