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Cluster: HRGMv2_0160_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0160_10 HRGMv2_0160_10_55 59568 61631 + GH13_8
NULL(UNKNOWN) HRGMv2_0160_10 HRGMv2_0160_10_56 61770 62831 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0160_10 HRGMv2_0160_10_57 62876 65437 - 9.A.8.1.6
CAZyme HRGMv2_0160_10 HRGMv2_0160_10_58 65646 66755 - GH105
CAZyme HRGMv2_0160_10 HRGMv2_0160_10_59 66752 69295 - GH106
STP HRGMv2_0160_10 HRGMv2_0160_10_60 69638 71071 + HD
CAZyme HRGMv2_0160_10 HRGMv2_0160_10_61 71532 73196 - CE12 | CE12
pfam HRGMv2_0160_10 HRGMv2_0160_10_62 73319 73639 - rhaM
CAZyme HRGMv2_0160_10 HRGMv2_0160_10_63 73737 74750 - GH43_18
Gene ID: HRGMv2_0160_10_55
Type: CAZyme
Location: 59568 - 61631 (+)
Gene ID: HRGMv2_0160_10_56
Type:
Location: 61770 - 62831 (+)
Gene ID: HRGMv2_0160_10_57
Type: TC
Location: 62876 - 65437 (-)
Gene ID: HRGMv2_0160_10_58
Type: CAZyme
Location: 65646 - 66755 (-)
Gene ID: HRGMv2_0160_10_59
Type: CAZyme
Location: 66752 - 69295 (-)
Gene ID: HRGMv2_0160_10_60
Type: STP
Location: 69638 - 71071 (+)
Gene ID: HRGMv2_0160_10_61
Type: CAZyme
Location: 71532 - 73196 (-)
Gene ID: HRGMv2_0160_10_62
Type: pfam
Location: 73319 - 73639 (-)
Gene ID: HRGMv2_0160_10_63
Type: CAZyme
Location: 73737 - 74750 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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