Cluster: HRGMv2_0159_CGC99
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 6
- Substrate: pectin
- Genome ID: HRGMv2_0159
- CGC Family ID: CGCFAM_01248
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0159_22 | HRGMv2_0159_22_72 | 119125 | 121776 | + | 3.A.3.4.1 |
| pfam | HRGMv2_0159_22 | HRGMv2_0159_22_73 | 121938 | 123461 | + | Redoxin | Thioredoxin_8 |
| CAZyme | HRGMv2_0159_22 | HRGMv2_0159_22_74 | 123751 | 127050 | + | GH106 |
| CAZyme | HRGMv2_0159_22 | HRGMv2_0159_22_75 | 127167 | 128600 | + | CE20 |
| CAZyme | HRGMv2_0159_22 | HRGMv2_0159_22_76 | 128634 | 131018 | + | GH139 |
| CAZyme | HRGMv2_0159_22 | HRGMv2_0159_22_77 | 131137 | 133791 | + | GH2 |
| TF | HRGMv2_0159_22 | HRGMv2_0159_22_78 | 133965 | 138359 | + | HTH_AraC |
| CAZyme | HRGMv2_0159_22 | HRGMv2_0159_22_79 | 138418 | 140100 | + | PL1_2 |
| CAZyme | HRGMv2_0159_22 | HRGMv2_0159_22_80 | 140131 | 143217 | + | PL29 |
Gene ID: HRGMv2_0159_22_72
Type: TC
Location: 119125 - 121776 (+)
Type: TC
Location: 119125 - 121776 (+)
Gene ID: HRGMv2_0159_22_73
Type: pfam
Location: 121938 - 123461 (+)
Type: pfam
Location: 121938 - 123461 (+)
Gene ID: HRGMv2_0159_22_74
Type: CAZyme
Location: 123751 - 127050 (+)
Type: CAZyme
Location: 123751 - 127050 (+)
Gene ID: HRGMv2_0159_22_75
Type: CAZyme
Location: 127167 - 128600 (+)
Type: CAZyme
Location: 127167 - 128600 (+)
Gene ID: HRGMv2_0159_22_76
Type: CAZyme
Location: 128634 - 131018 (+)
Type: CAZyme
Location: 128634 - 131018 (+)
Gene ID: HRGMv2_0159_22_77
Type: CAZyme
Location: 131137 - 133791 (+)
Type: CAZyme
Location: 131137 - 133791 (+)
Gene ID: HRGMv2_0159_22_78
Type: TF
Location: 133965 - 138359 (+)
Type: TF
Location: 133965 - 138359 (+)
Gene ID: HRGMv2_0159_22_79
Type: CAZyme
Location: 138418 - 140100 (+)
Type: CAZyme
Location: 138418 - 140100 (+)
Gene ID: HRGMv2_0159_22_80
Type: CAZyme
Location: 140131 - 143217 (+)
Type: CAZyme
Location: 140131 - 143217 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.