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Cluster: HRGMv2_0159_CGC95

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0159_22 HRGMv2_0159_22_1 3 2762 + 1.B.14.6.13
TC HRGMv2_0159_22 HRGMv2_0159_22_2 2785 4422 + 8.A.46.2.2
CAZyme HRGMv2_0159_22 HRGMv2_0159_22_3 4469 5599 + GH18
pfam HRGMv2_0159_22 HRGMv2_0159_22_4 5620 6801 + BT_3987-like_N | Laminin_G_3
CAZyme HRGMv2_0159_22 HRGMv2_0159_22_5 7032 9215 + GH163
pfam HRGMv2_0159_22 HRGMv2_0159_22_6 9314 10642 + MFS_1 | MFS_1
CAZyme HRGMv2_0159_22 HRGMv2_0159_22_7 10659 11627 + GH130_2
CAZyme HRGMv2_0159_22 HRGMv2_0159_22_8 11635 13908 + GH92
pfam HRGMv2_0159_22 HRGMv2_0159_22_9 14210 15100 + AP_endonuc_2
pfam HRGMv2_0159_22 HRGMv2_0159_22_10 15441 16919 + DUF4957 | DUF4992 | DUF5123
TC HRGMv2_0159_22 HRGMv2_0159_22_11 16950 20258 + 1.B.14.6.2
pfam HRGMv2_0159_22 HRGMv2_0159_22_12 20273 22489 + SusD_RagB | SusD-like_3
pfam HRGMv2_0159_22 HRGMv2_0159_22_13 23479 24927 + DUF4957 | DUF4992
TC HRGMv2_0159_22 HRGMv2_0159_22_14 24931 28341 + 1.B.14.6.1
pfam HRGMv2_0159_22 HRGMv2_0159_22_15 28352 30586 + SusD_RagB | SusD-like_3
NULL(UNKNOWN) HRGMv2_0159_22 HRGMv2_0159_22_16 30659 30775 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0159_22 HRGMv2_0159_22_17 31350 33089 + PL1_2
pfam HRGMv2_0159_22 HRGMv2_0159_22_18 33092 33760 + DUF3826
CAZyme HRGMv2_0159_22 HRGMv2_0159_22_19 33966 34889 + GH43_18
CAZyme HRGMv2_0159_22 HRGMv2_0159_22_20 34922 38242 + GH142 | GH143
CAZyme HRGMv2_0159_22 HRGMv2_0159_22_21 38440 41274 + CBM67 | GH78
CAZyme HRGMv2_0159_22 HRGMv2_0159_22_22 41371 42705 + GH28
CAZyme HRGMv2_0159_22 HRGMv2_0159_22_23 42764 44728 + CE19
Gene ID: HRGMv2_0159_22_1
Type: TC
Location: 3 - 2762 (+)
Gene ID: HRGMv2_0159_22_2
Type: TC
Location: 2785 - 4422 (+)
Gene ID: HRGMv2_0159_22_3
Type: CAZyme
Location: 4469 - 5599 (+)
Gene ID: HRGMv2_0159_22_4
Type: pfam
Location: 5620 - 6801 (+)
Gene ID: HRGMv2_0159_22_5
Type: CAZyme
Location: 7032 - 9215 (+)
Gene ID: HRGMv2_0159_22_6
Type: pfam
Location: 9314 - 10642 (+)
Gene ID: HRGMv2_0159_22_7
Type: CAZyme
Location: 10659 - 11627 (+)
Gene ID: HRGMv2_0159_22_8
Type: CAZyme
Location: 11635 - 13908 (+)
Gene ID: HRGMv2_0159_22_9
Type: pfam
Location: 14210 - 15100 (+)
Gene ID: HRGMv2_0159_22_10
Type: pfam
Location: 15441 - 16919 (+)
Gene ID: HRGMv2_0159_22_11
Type: TC
Location: 16950 - 20258 (+)
Gene ID: HRGMv2_0159_22_12
Type: pfam
Location: 20273 - 22489 (+)
Gene ID: HRGMv2_0159_22_13
Type: pfam
Location: 23479 - 24927 (+)
Gene ID: HRGMv2_0159_22_14
Type: TC
Location: 24931 - 28341 (+)
Gene ID: HRGMv2_0159_22_15
Type: pfam
Location: 28352 - 30586 (+)
Gene ID: HRGMv2_0159_22_16
Type:
Location: 30659 - 30775 (+)
Gene ID: HRGMv2_0159_22_17
Type: CAZyme
Location: 31350 - 33089 (+)
Gene ID: HRGMv2_0159_22_18
Type: pfam
Location: 33092 - 33760 (+)
Gene ID: HRGMv2_0159_22_19
Type: CAZyme
Location: 33966 - 34889 (+)
Gene ID: HRGMv2_0159_22_20
Type: CAZyme
Location: 34922 - 38242 (+)
Gene ID: HRGMv2_0159_22_21
Type: CAZyme
Location: 38440 - 41274 (+)
Gene ID: HRGMv2_0159_22_22
Type: CAZyme
Location: 41371 - 42705 (+)
Gene ID: HRGMv2_0159_22_23
Type: CAZyme
Location: 42764 - 44728 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Bacteroides
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0159_22_23 vegetarian > omnivore 1.06467 0.00455

🧭 Explore Read Mapping of CGC

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