Cluster: HRGMv2_0159_CGC93
🧬 Cluster Details
- Gene Count: 23
- CAZyme Count: 14
- Substrate: xylan
- Genome ID: HRGMv2_0159
- CGC Family ID: CGCFAM_00238
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0159_21 | HRGMv2_0159_21_49 | 74579 | 75871 | + | 2.A.1.7.1 |
| sulfatase | HRGMv2_0159_21 | HRGMv2_0159_21_50 | 75897 | 76913 | + | S1_16 |
| CAZyme | HRGMv2_0159_21 | HRGMv2_0159_21_51 | 77098 | 79683 | + | GH3 |
| CAZyme | HRGMv2_0159_21 | HRGMv2_0159_21_52 | 80238 | 81965 | + | CBM91 | GH43_12 |
| CAZyme | HRGMv2_0159_21 | HRGMv2_0159_21_53 | 81991 | 84435 | + | GH31_4 |
| CAZyme | HRGMv2_0159_21 | HRGMv2_0159_21_54 | 84492 | 86432 | + | GH97 |
| CAZyme | HRGMv2_0159_21 | HRGMv2_0159_21_55 | 86544 | 87293 | + | CE1 |
| CAZyme | HRGMv2_0159_21 | HRGMv2_0159_21_56 | 87305 | 89833 | + | GH31_5 |
| CAZyme | HRGMv2_0159_21 | HRGMv2_0159_21_57 | 89870 | 91201 | + | CBM6 | GH43_29 |
| CAZyme | HRGMv2_0159_21 | HRGMv2_0159_21_58 | 91251 | 92876 | + | CBM91 | GH43_10 |
| CAZyme | HRGMv2_0159_21 | HRGMv2_0159_21_59 | 93039 | 94796 | + | CBM91 | GH43_12 |
| TC | HRGMv2_0159_21 | HRGMv2_0159_21_60 | 94930 | 98034 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0159_21 | HRGMv2_0159_21_61 | 98048 | 99868 | + | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0159_21 | HRGMv2_0159_21_62 | 99906 | 102716 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0159_21 | HRGMv2_0159_21_63 | 102738 | 104498 | + | SusD_RagB | SusD-like_3 |
| pfam | HRGMv2_0159_21 | HRGMv2_0159_21_64 | 104530 | 105567 | + | BT_3987-like_N | DUF5627 |
| CAZyme | HRGMv2_0159_21 | HRGMv2_0159_21_65 | 105597 | 109148 | + | CE6 | GH5_21 |
| CAZyme | HRGMv2_0159_21 | HRGMv2_0159_21_66 | 109236 | 110696 | + | CBM6 | GH43_29 |
| CAZyme | HRGMv2_0159_21 | HRGMv2_0159_21_67 | 110703 | 111578 | + | CE1 |
| CAZyme | HRGMv2_0159_21 | HRGMv2_0159_21_68 | 111637 | 112467 | + | CE6 |
| TF | HRGMv2_0159_21 | HRGMv2_0159_21_69 | 112530 | 116549 | - | 0035607 |
| NULL(UNKNOWN) | HRGMv2_0159_21 | HRGMv2_0159_21_70 | 116846 | 117124 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0159_21 | HRGMv2_0159_21_71 | 117177 | 119702 | - | GH95 |
Gene ID: HRGMv2_0159_21_49
Type: TC
Location: 74579 - 75871 (+)
Type: TC
Location: 74579 - 75871 (+)
Gene ID: HRGMv2_0159_21_50
Type: sulfatase
Location: 75897 - 76913 (+)
Type: sulfatase
Location: 75897 - 76913 (+)
Gene ID: HRGMv2_0159_21_51
Type: CAZyme
Location: 77098 - 79683 (+)
Type: CAZyme
Location: 77098 - 79683 (+)
Gene ID: HRGMv2_0159_21_52
Type: CAZyme
Location: 80238 - 81965 (+)
Type: CAZyme
Location: 80238 - 81965 (+)
Gene ID: HRGMv2_0159_21_53
Type: CAZyme
Location: 81991 - 84435 (+)
Type: CAZyme
Location: 81991 - 84435 (+)
Gene ID: HRGMv2_0159_21_54
Type: CAZyme
Location: 84492 - 86432 (+)
Type: CAZyme
Location: 84492 - 86432 (+)
Gene ID: HRGMv2_0159_21_55
Type: CAZyme
Location: 86544 - 87293 (+)
Type: CAZyme
Location: 86544 - 87293 (+)
Gene ID: HRGMv2_0159_21_56
Type: CAZyme
Location: 87305 - 89833 (+)
Type: CAZyme
Location: 87305 - 89833 (+)
Gene ID: HRGMv2_0159_21_57
Type: CAZyme
Location: 89870 - 91201 (+)
Type: CAZyme
Location: 89870 - 91201 (+)
Gene ID: HRGMv2_0159_21_58
Type: CAZyme
Location: 91251 - 92876 (+)
Type: CAZyme
Location: 91251 - 92876 (+)
Gene ID: HRGMv2_0159_21_59
Type: CAZyme
Location: 93039 - 94796 (+)
Type: CAZyme
Location: 93039 - 94796 (+)
Gene ID: HRGMv2_0159_21_60
Type: TC
Location: 94930 - 98034 (+)
Type: TC
Location: 94930 - 98034 (+)
Gene ID: HRGMv2_0159_21_61
Type: pfam
Location: 98048 - 99868 (+)
Type: pfam
Location: 98048 - 99868 (+)
Gene ID: HRGMv2_0159_21_62
Type: TC
Location: 99906 - 102716 (+)
Type: TC
Location: 99906 - 102716 (+)
Gene ID: HRGMv2_0159_21_63
Type: pfam
Location: 102738 - 104498 (+)
Type: pfam
Location: 102738 - 104498 (+)
Gene ID: HRGMv2_0159_21_64
Type: pfam
Location: 104530 - 105567 (+)
Type: pfam
Location: 104530 - 105567 (+)
Gene ID: HRGMv2_0159_21_65
Type: CAZyme
Location: 105597 - 109148 (+)
Type: CAZyme
Location: 105597 - 109148 (+)
Gene ID: HRGMv2_0159_21_66
Type: CAZyme
Location: 109236 - 110696 (+)
Type: CAZyme
Location: 109236 - 110696 (+)
Gene ID: HRGMv2_0159_21_67
Type: CAZyme
Location: 110703 - 111578 (+)
Type: CAZyme
Location: 110703 - 111578 (+)
Gene ID: HRGMv2_0159_21_68
Type: CAZyme
Location: 111637 - 112467 (+)
Type: CAZyme
Location: 111637 - 112467 (+)
Gene ID: HRGMv2_0159_21_69
Type: TF
Location: 112530 - 116549 (-)
Type: TF
Location: 112530 - 116549 (-)
Gene ID: HRGMv2_0159_21_70
Type:
Location: 116846 - 117124 (+)
Type:
Location: 116846 - 117124 (+)
Gene ID: HRGMv2_0159_21_71
Type: CAZyme
Location: 117177 - 119702 (-)
Type: CAZyme
Location: 117177 - 119702 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0159_21_56 | vegan > omnivore | 3.15978 | 0.00020 |