Cluster: HRGMv2_0159_CGC92
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0159
- CGC Family ID: CGCFAM_00983
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0159_21 | HRGMv2_0159_21_28 | 44479 | 45666 | - | CE9 |
| TC | HRGMv2_0159_21 | HRGMv2_0159_21_29 | 45688 | 47004 | - | 2.A.1.7.9 |
| pfam | HRGMv2_0159_21 | HRGMv2_0159_21_30 | 47040 | 48527 | - | Fasciclin | Cadherin_3 | CBM96 |
| TC | HRGMv2_0159_21 | HRGMv2_0159_21_31 | 48552 | 50042 | - | 8.A.46.1.4 |
| TC | HRGMv2_0159_21 | HRGMv2_0159_21_32 | 50065 | 53145 | - | 1.B.14.6.1 |
Gene ID: HRGMv2_0159_21_28
Type: CAZyme
Location: 44479 - 45666 (-)
Type: CAZyme
Location: 44479 - 45666 (-)
Gene ID: HRGMv2_0159_21_29
Type: TC
Location: 45688 - 47004 (-)
Type: TC
Location: 45688 - 47004 (-)
Gene ID: HRGMv2_0159_21_30
Type: pfam
Location: 47040 - 48527 (-)
Type: pfam
Location: 47040 - 48527 (-)
Gene ID: HRGMv2_0159_21_31
Type: TC
Location: 48552 - 50042 (-)
Type: TC
Location: 48552 - 50042 (-)
Gene ID: HRGMv2_0159_21_32
Type: TC
Location: 50065 - 53145 (-)
Type: TC
Location: 50065 - 53145 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0159_21_28 | vegan > omnivore | 2.50176 | 0.00020 |
| HRGMv2_0159_21_28 | vegetarian > omnivore | 1.32018 | 0.00744 |
| HRGMv2_0159_21_29 | vegan > omnivore | 2.98153 | 0.00020 |
| HRGMv2_0159_21_29 | vegetarian > omnivore | 2.34415 | 0.00744 |
| HRGMv2_0159_21_30 | vegan > omnivore | 5.05910 | 0.00020 |
| HRGMv2_0159_21_30 | vegetarian > omnivore | 2.62709 | 0.00744 |
| HRGMv2_0159_21_31 | vegan > omnivore | 2.78229 | 0.00020 |
| HRGMv2_0159_21_32 | vegan > omnivore | 3.53796 | 0.00020 |
| HRGMv2_0159_21_32 | vegetarian > omnivore | 1.61451 | 0.00744 |