Cluster: HRGMv2_0159_CGC72
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_0159
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0159_16 | HRGMv2_0159_16_31 | 44338 | 45993 | + | 2.A.1.42.2 |
| CAZyme | HRGMv2_0159_16 | HRGMv2_0159_16_32 | 46093 | 47646 | - | GH28 |
| TF | HRGMv2_0159_16 | HRGMv2_0159_16_33 | 47859 | 52238 | + | HTH_AraC |
| CAZyme | HRGMv2_0159_16 | HRGMv2_0159_16_34 | 52275 | 53579 | - | CE8 |
| pfam | HRGMv2_0159_16 | HRGMv2_0159_16_35 | 53613 | 55286 | - | DUF4957 | DUF5123 |
| sulfatase | HRGMv2_0159_16 | HRGMv2_0159_16_36 | 55303 | 57378 | - | S1_27 |
| TC | HRGMv2_0159_16 | HRGMv2_0159_16_37 | 57389 | 60640 | - | 1.B.14.6.1 |
| CAZyme | HRGMv2_0159_16 | HRGMv2_0159_16_38 | 60752 | 63202 | - | GH95 |
| CAZyme | HRGMv2_0159_16 | HRGMv2_0159_16_39 | 63254 | 64873 | - | CE8 |
| CAZyme | HRGMv2_0159_16 | HRGMv2_0159_16_40 | 65157 | 66797 | + | PL1_2 |
Gene ID: HRGMv2_0159_16_31
Type: TC
Location: 44338 - 45993 (+)
Type: TC
Location: 44338 - 45993 (+)
Gene ID: HRGMv2_0159_16_32
Type: CAZyme
Location: 46093 - 47646 (-)
Type: CAZyme
Location: 46093 - 47646 (-)
Gene ID: HRGMv2_0159_16_33
Type: TF
Location: 47859 - 52238 (+)
Type: TF
Location: 47859 - 52238 (+)
Gene ID: HRGMv2_0159_16_34
Type: CAZyme
Location: 52275 - 53579 (-)
Type: CAZyme
Location: 52275 - 53579 (-)
Gene ID: HRGMv2_0159_16_35
Type: pfam
Location: 53613 - 55286 (-)
Type: pfam
Location: 53613 - 55286 (-)
Gene ID: HRGMv2_0159_16_36
Type: sulfatase
Location: 55303 - 57378 (-)
Type: sulfatase
Location: 55303 - 57378 (-)
Gene ID: HRGMv2_0159_16_37
Type: TC
Location: 57389 - 60640 (-)
Type: TC
Location: 57389 - 60640 (-)
Gene ID: HRGMv2_0159_16_38
Type: CAZyme
Location: 60752 - 63202 (-)
Type: CAZyme
Location: 60752 - 63202 (-)
Gene ID: HRGMv2_0159_16_39
Type: CAZyme
Location: 63254 - 64873 (-)
Type: CAZyme
Location: 63254 - 64873 (-)
Gene ID: HRGMv2_0159_16_40
Type: CAZyme
Location: 65157 - 66797 (+)
Type: CAZyme
Location: 65157 - 66797 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0159_16_32 | vegan > omnivore | 3.21307 | 0.00020 |
| HRGMv2_0159_16_32 | vegetarian > omnivore | 2.04744 | 0.00744 |
| HRGMv2_0159_16_33 | vegan > omnivore | 3.11958 | 0.00020 |
| HRGMv2_0159_16_33 | vegetarian > omnivore | 2.80122 | 0.00744 |
| HRGMv2_0159_16_34 | vegan > omnivore | 2.76607 | 0.00020 |
| HRGMv2_0159_16_34 | vegetarian > omnivore | 2.70980 | 0.00744 |
| HRGMv2_0159_16_35 | vegan > omnivore | 3.01730 | 0.00020 |
| HRGMv2_0159_16_35 | vegetarian > omnivore | 3.12116 | 0.00571 |
| HRGMv2_0159_16_36 | vegan > omnivore | 2.36347 | 0.00020 |
| HRGMv2_0159_16_36 | vegetarian > omnivore | 2.52979 | 0.00744 |
| HRGMv2_0159_16_37 | vegan > omnivore | 2.73576 | 0.00020 |
| HRGMv2_0159_16_37 | vegetarian > omnivore | 1.40462 | 0.00744 |
| HRGMv2_0159_16_38 | vegan > omnivore | 2.75717 | 0.00020 |
| HRGMv2_0159_16_38 | vegetarian > omnivore | 1.79754 | 0.00744 |
| HRGMv2_0159_16_39 | vegan > omnivore | 2.91288 | 0.00020 |
| HRGMv2_0159_16_39 | vegetarian > omnivore | 1.30954 | 0.00744 |
| HRGMv2_0159_16_40 | vegan > omnivore | 2.74744 | 0.00020 |
| HRGMv2_0159_16_40 | vegetarian > omnivore | 1.86306 | 0.00744 |