Cluster: HRGMv2_0159_CGC62
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_0159
- CGC Family ID: CGCFAM_00440
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0159_13 | HRGMv2_0159_13_1 | 562 | 3795 | + | 1.B.14.6.2 |
| pfam | HRGMv2_0159_13 | HRGMv2_0159_13_2 | 3809 | 5431 | + | SusD-like | SusD-like | SusD-like_2 |
| NULL(UNKNOWN) | HRGMv2_0159_13 | HRGMv2_0159_13_3 | 5467 | 5847 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0159_13 | HRGMv2_0159_13_4 | 5869 | 7503 | + | GH5_38 |
| CAZyme | HRGMv2_0159_13 | HRGMv2_0159_13_5 | 7515 | 9827 | + | GH3 |
| CAZyme | HRGMv2_0159_13 | HRGMv2_0159_13_6 | 9866 | 12271 | + | GH3 |
| NULL(UNKNOWN) | HRGMv2_0159_13 | HRGMv2_0159_13_7 | 12660 | 13697 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0159_13 | HRGMv2_0159_13_8 | 13931 | 16216 | - | GH3 |
| CAZyme | HRGMv2_0159_13 | HRGMv2_0159_13_9 | 16254 | 17618 | - | GH144 |
| CAZyme | HRGMv2_0159_13 | HRGMv2_0159_13_10 | 17647 | 19755 | - | CBM32 | GH43_28 |
| TC | HRGMv2_0159_13 | HRGMv2_0159_13_11 | 19779 | 21245 | - | 8.A.46.1.6 |
| TC | HRGMv2_0159_13 | HRGMv2_0159_13_12 | 21291 | 24320 | - | 1.B.14.6.1 |
Gene ID: HRGMv2_0159_13_1
Type: TC
Location: 562 - 3795 (+)
Type: TC
Location: 562 - 3795 (+)
Gene ID: HRGMv2_0159_13_2
Type: pfam
Location: 3809 - 5431 (+)
Type: pfam
Location: 3809 - 5431 (+)
Gene ID: HRGMv2_0159_13_3
Type:
Location: 5467 - 5847 (+)
Type:
Location: 5467 - 5847 (+)
Gene ID: HRGMv2_0159_13_4
Type: CAZyme
Location: 5869 - 7503 (+)
Type: CAZyme
Location: 5869 - 7503 (+)
Gene ID: HRGMv2_0159_13_5
Type: CAZyme
Location: 7515 - 9827 (+)
Type: CAZyme
Location: 7515 - 9827 (+)
Gene ID: HRGMv2_0159_13_6
Type: CAZyme
Location: 9866 - 12271 (+)
Type: CAZyme
Location: 9866 - 12271 (+)
Gene ID: HRGMv2_0159_13_7
Type:
Location: 12660 - 13697 (-)
Type:
Location: 12660 - 13697 (-)
Gene ID: HRGMv2_0159_13_8
Type: CAZyme
Location: 13931 - 16216 (-)
Type: CAZyme
Location: 13931 - 16216 (-)
Gene ID: HRGMv2_0159_13_9
Type: CAZyme
Location: 16254 - 17618 (-)
Type: CAZyme
Location: 16254 - 17618 (-)
Gene ID: HRGMv2_0159_13_10
Type: CAZyme
Location: 17647 - 19755 (-)
Type: CAZyme
Location: 17647 - 19755 (-)
Gene ID: HRGMv2_0159_13_11
Type: TC
Location: 19779 - 21245 (-)
Type: TC
Location: 19779 - 21245 (-)
Gene ID: HRGMv2_0159_13_12
Type: TC
Location: 21291 - 24320 (-)
Type: TC
Location: 21291 - 24320 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0159_13_9 | vegetarian > omnivore | 1.08718 | 0.00744 |