Cluster: HRGMv2_0159_CGC5
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0159
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0159_1 | HRGMv2_0159_1_276 | 317526 | 320780 | + | 1.B.14.6.1 |
| TC | HRGMv2_0159_1 | HRGMv2_0159_1_277 | 320812 | 322365 | + | 8.A.46.1.5 |
| pfam | HRGMv2_0159_1 | HRGMv2_0159_1_278 | 322401 | 323819 | + | DUF5121 |
| CAZyme | HRGMv2_0159_1 | HRGMv2_0159_1_279 | 323851 | 326421 | + | GH2 |
Gene ID: HRGMv2_0159_1_276
Type: TC
Location: 317526 - 320780 (+)
Type: TC
Location: 317526 - 320780 (+)
Gene ID: HRGMv2_0159_1_277
Type: TC
Location: 320812 - 322365 (+)
Type: TC
Location: 320812 - 322365 (+)
Gene ID: HRGMv2_0159_1_278
Type: pfam
Location: 322401 - 323819 (+)
Type: pfam
Location: 322401 - 323819 (+)
Gene ID: HRGMv2_0159_1_279
Type: CAZyme
Location: 323851 - 326421 (+)
Type: CAZyme
Location: 323851 - 326421 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0159_1_276 | vegan > omnivore | 4.35989 | 0.00020 |
| HRGMv2_0159_1_276 | vegetarian > omnivore | 3.17420 | 0.00744 |
| HRGMv2_0159_1_277 | vegan > omnivore | 4.94434 | 0.00020 |
| HRGMv2_0159_1_277 | vegetarian > omnivore | 3.45308 | 0.00744 |
| HRGMv2_0159_1_278 | vegan > omnivore | 4.90861 | 0.00020 |
| HRGMv2_0159_1_278 | vegetarian > omnivore | 3.25846 | 0.00744 |
| HRGMv2_0159_1_279 | vegan > omnivore | 4.19610 | 0.00020 |
| HRGMv2_0159_1_279 | vegetarian > omnivore | 3.14949 | 0.00744 |