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Cluster: HRGMv2_0159_CGC46

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0159_8 HRGMv2_0159_8_169 194712 197153 - GH2
CAZyme HRGMv2_0159_8 HRGMv2_0159_8_170 197225 198304 - GH53
pfam HRGMv2_0159_8 HRGMv2_0159_8_171 198316 200040 - SusE | DUF5111 | DUF5114
TC HRGMv2_0159_8 HRGMv2_0159_8_172 200064 201641 - 8.A.46.1.1
TC HRGMv2_0159_8 HRGMv2_0159_8_173 201663 204638 - 1.B.14.6.1
CAZyme HRGMv2_0159_8 HRGMv2_0159_8_174 204681 207293 - GH147
TF HRGMv2_0159_8 HRGMv2_0159_8_175 207409 210933 - HTH_AraC
pfam HRGMv2_0159_8 HRGMv2_0159_8_176 211081 211632 + DUF4738
CAZyme HRGMv2_0159_8 HRGMv2_0159_8_177 211756 212952 + PL13
Gene ID: HRGMv2_0159_8_169
Type: CAZyme
Location: 194712 - 197153 (-)
Gene ID: HRGMv2_0159_8_170
Type: CAZyme
Location: 197225 - 198304 (-)
Gene ID: HRGMv2_0159_8_171
Type: pfam
Location: 198316 - 200040 (-)
Gene ID: HRGMv2_0159_8_172
Type: TC
Location: 200064 - 201641 (-)
Gene ID: HRGMv2_0159_8_173
Type: TC
Location: 201663 - 204638 (-)
Gene ID: HRGMv2_0159_8_174
Type: CAZyme
Location: 204681 - 207293 (-)
Gene ID: HRGMv2_0159_8_175
Type: TF
Location: 207409 - 210933 (-)
Gene ID: HRGMv2_0159_8_176
Type: pfam
Location: 211081 - 211632 (+)
Gene ID: HRGMv2_0159_8_177
Type: CAZyme
Location: 211756 - 212952 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Bacteroides
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0159_8_172 vegan > omnivore 2.01018 0.00020
HRGMv2_0159_8_172 vegetarian > omnivore 1.73720 0.00744

🧭 Explore Read Mapping of CGC

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