Cluster: HRGMv2_0159_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0159
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0159_1 | HRGMv2_0159_1_212 | 246044 | 249424 | + | 1.B.14.6.1 |
| TC | HRGMv2_0159_1 | HRGMv2_0159_1_213 | 249451 | 250908 | + | 8.A.46.3.2 |
| pfam | HRGMv2_0159_1 | HRGMv2_0159_1_214 | 250933 | 252099 | + | Metallophos |
| pfam | HRGMv2_0159_1 | HRGMv2_0159_1_215 | 252120 | 253268 | + | Metallophos |
| CAZyme | HRGMv2_0159_1 | HRGMv2_0159_1_216 | 253456 | 254700 | - | GT1 |
Gene ID: HRGMv2_0159_1_212
Type: TC
Location: 246044 - 249424 (+)
Type: TC
Location: 246044 - 249424 (+)
Gene ID: HRGMv2_0159_1_213
Type: TC
Location: 249451 - 250908 (+)
Type: TC
Location: 249451 - 250908 (+)
Gene ID: HRGMv2_0159_1_214
Type: pfam
Location: 250933 - 252099 (+)
Type: pfam
Location: 250933 - 252099 (+)
Gene ID: HRGMv2_0159_1_215
Type: pfam
Location: 252120 - 253268 (+)
Type: pfam
Location: 252120 - 253268 (+)
Gene ID: HRGMv2_0159_1_216
Type: CAZyme
Location: 253456 - 254700 (-)
Type: CAZyme
Location: 253456 - 254700 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0159_1_212 | vegan > omnivore | 1.22985 | 0.00020 |
| HRGMv2_0159_1_212 | vegetarian > omnivore | 1.16803 | 0.00744 |
| HRGMv2_0159_1_213 | vegan > omnivore | 1.63924 | 0.00020 |
| HRGMv2_0159_1_213 | vegetarian > omnivore | 1.78716 | 0.00744 |
| HRGMv2_0159_1_214 | vegan > omnivore | 1.30396 | 0.00020 |
| HRGMv2_0159_1_215 | vegan > omnivore | 1.34640 | 0.00020 |
| HRGMv2_0159_1_216 | vegan > omnivore | 1.19441 | 0.00020 |