Cluster: HRGMv2_0159_CGC39
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 6
- Substrate: beta-mannan/xylan/beta-glucan
- Genome ID: HRGMv2_0159
- CGC Family ID: CGCFAM_00044
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0159_7 | HRGMv2_0159_7_32 | 50924 | 52789 | + | 2.A.21.9.2 |
| pfam | HRGMv2_0159_7 | HRGMv2_0159_7_33 | 52836 | 53612 | + | Abhydrolase_1 | Hydrolase_4 | Hydrolase_4 | Abhydrolase_6 |
| TC | HRGMv2_0159_7 | HRGMv2_0159_7_34 | 53618 | 55072 | - | 3.A.1.131.2 |
| CAZyme | HRGMv2_0159_7 | HRGMv2_0159_7_35 | 55203 | 57344 | - | GH67 |
| CAZyme | HRGMv2_0159_7 | HRGMv2_0159_7_36 | 57395 | 58372 | - | GH43_1 |
| CAZyme | HRGMv2_0159_7 | HRGMv2_0159_7_37 | 58427 | 59563 | - | GH10 |
| TC | HRGMv2_0159_7 | HRGMv2_0159_7_38 | 59593 | 61077 | - | 2.A.2.3.4 |
| CAZyme | HRGMv2_0159_7 | HRGMv2_0159_7_39 | 61099 | 62745 | - | CE20 | CE20 |
| CAZyme | HRGMv2_0159_7 | HRGMv2_0159_7_40 | 63078 | 65300 | - | GH10 |
| pfam | HRGMv2_0159_7 | HRGMv2_0159_7_41 | 65325 | 66731 | - | SGBP_B_XBD |
| pfam | HRGMv2_0159_7 | HRGMv2_0159_7_42 | 66746 | 68392 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0159_7 | HRGMv2_0159_7_43 | 68412 | 71585 | - | 1.B.14.6.1 |
| TF | HRGMv2_0159_7 | HRGMv2_0159_7_44 | 71984 | 76126 | + | HTH_AraC |
| CAZyme | HRGMv2_0159_7 | HRGMv2_0159_7_45 | 76130 | 78130 | - | GH13_14 |
Gene ID: HRGMv2_0159_7_32
Type: TC
Location: 50924 - 52789 (+)
Type: TC
Location: 50924 - 52789 (+)
Gene ID: HRGMv2_0159_7_33
Type: pfam
Location: 52836 - 53612 (+)
Type: pfam
Location: 52836 - 53612 (+)
Gene ID: HRGMv2_0159_7_34
Type: TC
Location: 53618 - 55072 (-)
Type: TC
Location: 53618 - 55072 (-)
Gene ID: HRGMv2_0159_7_35
Type: CAZyme
Location: 55203 - 57344 (-)
Type: CAZyme
Location: 55203 - 57344 (-)
Gene ID: HRGMv2_0159_7_36
Type: CAZyme
Location: 57395 - 58372 (-)
Type: CAZyme
Location: 57395 - 58372 (-)
Gene ID: HRGMv2_0159_7_37
Type: CAZyme
Location: 58427 - 59563 (-)
Type: CAZyme
Location: 58427 - 59563 (-)
Gene ID: HRGMv2_0159_7_38
Type: TC
Location: 59593 - 61077 (-)
Type: TC
Location: 59593 - 61077 (-)
Gene ID: HRGMv2_0159_7_39
Type: CAZyme
Location: 61099 - 62745 (-)
Type: CAZyme
Location: 61099 - 62745 (-)
Gene ID: HRGMv2_0159_7_40
Type: CAZyme
Location: 63078 - 65300 (-)
Type: CAZyme
Location: 63078 - 65300 (-)
Gene ID: HRGMv2_0159_7_41
Type: pfam
Location: 65325 - 66731 (-)
Type: pfam
Location: 65325 - 66731 (-)
Gene ID: HRGMv2_0159_7_42
Type: pfam
Location: 66746 - 68392 (-)
Type: pfam
Location: 66746 - 68392 (-)
Gene ID: HRGMv2_0159_7_43
Type: TC
Location: 68412 - 71585 (-)
Type: TC
Location: 68412 - 71585 (-)
Gene ID: HRGMv2_0159_7_44
Type: TF
Location: 71984 - 76126 (+)
Type: TF
Location: 71984 - 76126 (+)
Gene ID: HRGMv2_0159_7_45
Type: CAZyme
Location: 76130 - 78130 (-)
Type: CAZyme
Location: 76130 - 78130 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0159_7_40 | vegan > omnivore | 1.28720 | 0.00020 |
| HRGMv2_0159_7_40 | vegetarian > omnivore | 1.37468 | 0.00744 |
| HRGMv2_0159_7_41 | vegan > omnivore | 1.25937 | 0.00020 |
| HRGMv2_0159_7_41 | vegetarian > omnivore | 1.08112 | 0.00744 |
| HRGMv2_0159_7_42 | vegan > omnivore | 1.33265 | 0.00020 |
| HRGMv2_0159_7_42 | vegetarian > omnivore | 1.40374 | 0.00744 |
| HRGMv2_0159_7_43 | vegan > omnivore | 1.01909 | 0.00020 |
| HRGMv2_0159_7_44 | vegan > omnivore | 1.55970 | 0.00020 |
| HRGMv2_0159_7_44 | vegetarian > omnivore | 1.83191 | 0.00744 |