Cluster: HRGMv2_0159_CGC37
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_0159
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0159_6 | HRGMv2_0159_6_168 | 234169 | 236805 | + | CBM67 | GH78 |
| CAZyme | HRGMv2_0159_6 | HRGMv2_0159_6_169 | 236867 | 239332 | + | GH2 |
| pfam | HRGMv2_0159_6 | HRGMv2_0159_6_170 | 239338 | 240306 | + | ROK |
| STP | HRGMv2_0159_6 | HRGMv2_0159_6_171 | 240312 | 240890 | + | SIS |
| CAZyme | HRGMv2_0159_6 | HRGMv2_0159_6_172 | 240918 | 242513 | + | GH173 |
| TC | HRGMv2_0159_6 | HRGMv2_0159_6_173 | 242687 | 243802 | + | 2.A.1.7.17 |
| CAZyme | HRGMv2_0159_6 | HRGMv2_0159_6_174 | 243815 | 245914 | + | GH36 |
| CAZyme | HRGMv2_0159_6 | HRGMv2_0159_6_175 | 245911 | 249420 | + | GH173 | GH36 |
| NULL(UNKNOWN) | HRGMv2_0159_6 | HRGMv2_0159_6_176 | 249458 | 251206 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0159_6 | HRGMv2_0159_6_177 | 251236 | 254475 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0159_6 | HRGMv2_0159_6_178 | 254495 | 256333 | + | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0159_6 | HRGMv2_0159_6_179 | 256352 | 259378 | + | 1.B.14.6.1 |
Gene ID: HRGMv2_0159_6_168
Type: CAZyme
Location: 234169 - 236805 (+)
Type: CAZyme
Location: 234169 - 236805 (+)
Gene ID: HRGMv2_0159_6_169
Type: CAZyme
Location: 236867 - 239332 (+)
Type: CAZyme
Location: 236867 - 239332 (+)
Gene ID: HRGMv2_0159_6_170
Type: pfam
Location: 239338 - 240306 (+)
Type: pfam
Location: 239338 - 240306 (+)
Gene ID: HRGMv2_0159_6_171
Type: STP
Location: 240312 - 240890 (+)
Type: STP
Location: 240312 - 240890 (+)
Gene ID: HRGMv2_0159_6_172
Type: CAZyme
Location: 240918 - 242513 (+)
Type: CAZyme
Location: 240918 - 242513 (+)
Gene ID: HRGMv2_0159_6_173
Type: TC
Location: 242687 - 243802 (+)
Type: TC
Location: 242687 - 243802 (+)
Gene ID: HRGMv2_0159_6_174
Type: CAZyme
Location: 243815 - 245914 (+)
Type: CAZyme
Location: 243815 - 245914 (+)
Gene ID: HRGMv2_0159_6_175
Type: CAZyme
Location: 245911 - 249420 (+)
Type: CAZyme
Location: 245911 - 249420 (+)
Gene ID: HRGMv2_0159_6_176
Type:
Location: 249458 - 251206 (+)
Type:
Location: 249458 - 251206 (+)
Gene ID: HRGMv2_0159_6_177
Type: TC
Location: 251236 - 254475 (+)
Type: TC
Location: 251236 - 254475 (+)
Gene ID: HRGMv2_0159_6_178
Type: pfam
Location: 254495 - 256333 (+)
Type: pfam
Location: 254495 - 256333 (+)
Gene ID: HRGMv2_0159_6_179
Type: TC
Location: 256352 - 259378 (+)
Type: TC
Location: 256352 - 259378 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0159_6_168 | vegetarian > vegan | 1.34117 | 0.03545 |
| HRGMv2_0159_6_169 | vegetarian > omnivore | 1.14795 | 0.00744 |
| HRGMv2_0159_6_170 | vegetarian > vegan | 1.43263 | 0.03097 |
| HRGMv2_0159_6_171 | vegetarian > vegan | 1.45460 | 0.03097 |
| HRGMv2_0159_6_172 | vegetarian > vegan | 1.41345 | 0.01810 |
| HRGMv2_0159_6_173 | vegetarian > vegan | 1.28933 | 0.02631 |
| HRGMv2_0159_6_174 | vegetarian > omnivore | 1.04735 | 0.00744 |
| HRGMv2_0159_6_174 | vegetarian > vegan | 1.09318 | 0.04720 |
| HRGMv2_0159_6_175 | vegetarian > vegan | 1.33994 | 0.02631 |
| HRGMv2_0159_6_177 | vegetarian > vegan | 1.38306 | 0.02263 |
| HRGMv2_0159_6_178 | vegetarian > vegan | 1.25118 | 0.04138 |
| HRGMv2_0159_6_179 | vegetarian > vegan | 1.21128 | 0.02631 |