Cluster: HRGMv2_0159_CGC3
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_0159
- CGC Family ID: CGCFAM_01646
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0159_1 | HRGMv2_0159_1_129 | 158090 | 159958 | + | 3.A.1.120.6 |
| pfam | HRGMv2_0159_1 | HRGMv2_0159_1_130 | 159993 | 160844 | + | PHP |
| CAZyme | HRGMv2_0159_1 | HRGMv2_0159_1_131 | 160942 | 162984 | - | PL8 |
| sulfatase | HRGMv2_0159_1 | HRGMv2_0159_1_132 | 162997 | 164574 | - | S1_27 |
| CAZyme | HRGMv2_0159_1 | HRGMv2_0159_1_133 | 164594 | 165715 | - | GH117 | GH117 |
| NULL(UNKNOWN) | HRGMv2_0159_1 | HRGMv2_0159_1_134 | 165923 | 167365 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_0159_1 | HRGMv2_0159_1_135 | 167435 | 171496 | - | HTH_AraC |
| CAZyme | HRGMv2_0159_1 | HRGMv2_0159_1_136 | 171722 | 172924 | + | GH88 |
| TC | HRGMv2_0159_1 | HRGMv2_0159_1_137 | 172950 | 176114 | + | 1.B.14.6.1 |
| TC | HRGMv2_0159_1 | HRGMv2_0159_1_138 | 176135 | 177760 | + | 8.A.46.1.3 |
| pfam | HRGMv2_0159_1 | HRGMv2_0159_1_139 | 177787 | 178731 | + | DUF5017 |
| CAZyme | HRGMv2_0159_1 | HRGMv2_0159_1_140 | 178734 | 181184 | + | PL30 |
| pfam | HRGMv2_0159_1 | HRGMv2_0159_1_141 | 181211 | 182707 | + | Mfa_like_1 | DUF4627 |
| pfam | HRGMv2_0159_1 | HRGMv2_0159_1_142 | 182736 | 183551 | + | Mfa_like_1 |
| CAZyme | HRGMv2_0159_1 | HRGMv2_0159_1_143 | 183759 | 186014 | - | GH95 |
Gene ID: HRGMv2_0159_1_129
Type: TC
Location: 158090 - 159958 (+)
Type: TC
Location: 158090 - 159958 (+)
Gene ID: HRGMv2_0159_1_130
Type: pfam
Location: 159993 - 160844 (+)
Type: pfam
Location: 159993 - 160844 (+)
Gene ID: HRGMv2_0159_1_131
Type: CAZyme
Location: 160942 - 162984 (-)
Type: CAZyme
Location: 160942 - 162984 (-)
Gene ID: HRGMv2_0159_1_132
Type: sulfatase
Location: 162997 - 164574 (-)
Type: sulfatase
Location: 162997 - 164574 (-)
Gene ID: HRGMv2_0159_1_133
Type: CAZyme
Location: 164594 - 165715 (-)
Type: CAZyme
Location: 164594 - 165715 (-)
Gene ID: HRGMv2_0159_1_134
Type:
Location: 165923 - 167365 (+)
Type:
Location: 165923 - 167365 (+)
Gene ID: HRGMv2_0159_1_135
Type: TF
Location: 167435 - 171496 (-)
Type: TF
Location: 167435 - 171496 (-)
Gene ID: HRGMv2_0159_1_136
Type: CAZyme
Location: 171722 - 172924 (+)
Type: CAZyme
Location: 171722 - 172924 (+)
Gene ID: HRGMv2_0159_1_137
Type: TC
Location: 172950 - 176114 (+)
Type: TC
Location: 172950 - 176114 (+)
Gene ID: HRGMv2_0159_1_138
Type: TC
Location: 176135 - 177760 (+)
Type: TC
Location: 176135 - 177760 (+)
Gene ID: HRGMv2_0159_1_139
Type: pfam
Location: 177787 - 178731 (+)
Type: pfam
Location: 177787 - 178731 (+)
Gene ID: HRGMv2_0159_1_140
Type: CAZyme
Location: 178734 - 181184 (+)
Type: CAZyme
Location: 178734 - 181184 (+)
Gene ID: HRGMv2_0159_1_141
Type: pfam
Location: 181211 - 182707 (+)
Type: pfam
Location: 181211 - 182707 (+)
Gene ID: HRGMv2_0159_1_142
Type: pfam
Location: 182736 - 183551 (+)
Type: pfam
Location: 182736 - 183551 (+)
Gene ID: HRGMv2_0159_1_143
Type: CAZyme
Location: 183759 - 186014 (-)
Type: CAZyme
Location: 183759 - 186014 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.