Cluster: HRGMv2_0159_CGC22
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0159
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0159_4 | HRGMv2_0159_4_173 | 203866 | 205617 | - | 8.A.46.1.1 |
| TC | HRGMv2_0159_4 | HRGMv2_0159_4_174 | 205649 | 208864 | - | 1.B.14.6.1 |
| STP | HRGMv2_0159_4 | HRGMv2_0159_4_175 | 208977 | 210011 | - | FecR |
| STP | HRGMv2_0159_4 | HRGMv2_0159_4_176 | 210157 | 210720 | - | Sigma70_r2 | Sigma70_r4_2 |
| CAZyme | HRGMv2_0159_4 | HRGMv2_0159_4_177 | 210865 | 212997 | - | GH89 |
| CAZyme | HRGMv2_0159_4 | HRGMv2_0159_4_178 | 213067 | 215244 | - | GH35 |
Gene ID: HRGMv2_0159_4_173
Type: TC
Location: 203866 - 205617 (-)
Type: TC
Location: 203866 - 205617 (-)
Gene ID: HRGMv2_0159_4_174
Type: TC
Location: 205649 - 208864 (-)
Type: TC
Location: 205649 - 208864 (-)
Gene ID: HRGMv2_0159_4_175
Type: STP
Location: 208977 - 210011 (-)
Type: STP
Location: 208977 - 210011 (-)
Gene ID: HRGMv2_0159_4_176
Type: STP
Location: 210157 - 210720 (-)
Type: STP
Location: 210157 - 210720 (-)
Gene ID: HRGMv2_0159_4_177
Type: CAZyme
Location: 210865 - 212997 (-)
Type: CAZyme
Location: 210865 - 212997 (-)
Gene ID: HRGMv2_0159_4_178
Type: CAZyme
Location: 213067 - 215244 (-)
Type: CAZyme
Location: 213067 - 215244 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0159_4_175 | vegan > omnivore | 1.14393 | 0.00020 |
| HRGMv2_0159_4_175 | vegetarian > omnivore | 1.19775 | 0.00744 |
| HRGMv2_0159_4_176 | vegan > omnivore | 1.67374 | 0.00020 |
| HRGMv2_0159_4_176 | vegetarian > omnivore | 1.30692 | 0.00744 |