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Cluster: HRGMv2_0159_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0159_2 HRGMv2_0159_2_193 277753 280260 + GH20
pfam HRGMv2_0159_2 HRGMv2_0159_2_194 280384 282027 + DUF6377
TC HRGMv2_0159_2 HRGMv2_0159_2_195 282237 285242 + 1.B.14.6.1
pfam HRGMv2_0159_2 HRGMv2_0159_2_196 285242 286777 + SusD_RagB | SusD-like_3
CAZyme HRGMv2_0159_2 HRGMv2_0159_2_197 286807 288297 + GH30_3
pfam HRGMv2_0159_2 HRGMv2_0159_2_198 288320 290350 + DUF5016 | DUF5125 | DUF5121
pfam HRGMv2_0159_2 HRGMv2_0159_2_199 290387 292951 + Lipase_GDSL_2
CAZyme HRGMv2_0159_2 HRGMv2_0159_2_200 293105 295336 + GH3
Gene ID: HRGMv2_0159_2_193
Type: CAZyme
Location: 277753 - 280260 (+)
Gene ID: HRGMv2_0159_2_194
Type: pfam
Location: 280384 - 282027 (+)
Gene ID: HRGMv2_0159_2_195
Type: TC
Location: 282237 - 285242 (+)
Gene ID: HRGMv2_0159_2_196
Type: pfam
Location: 285242 - 286777 (+)
Gene ID: HRGMv2_0159_2_197
Type: CAZyme
Location: 286807 - 288297 (+)
Gene ID: HRGMv2_0159_2_198
Type: pfam
Location: 288320 - 290350 (+)
Gene ID: HRGMv2_0159_2_199
Type: pfam
Location: 290387 - 292951 (+)
Gene ID: HRGMv2_0159_2_200
Type: CAZyme
Location: 293105 - 295336 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Bacteroides
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0159_2_193 vegan > omnivore 1.03920 0.00020
HRGMv2_0159_2_193 vegetarian > omnivore 1.20185 0.00744

🧭 Explore Read Mapping of CGC

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