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Cluster: HRGMv2_0159_CGC122

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0159_37 HRGMv2_0159_37_12 14554 14997 + 1.E.14.1.13
TC HRGMv2_0159_37 HRGMv2_0159_37_13 14994 15689 + 2.A.122.1.1
pfam HRGMv2_0159_37 HRGMv2_0159_37_14 15746 16663 + LPG_synthase_C
pfam HRGMv2_0159_37 HRGMv2_0159_37_15 16677 17693 + Acetyltransf_1 | Acetyltransf_9
CAZyme HRGMv2_0159_37 HRGMv2_0159_37_16 17793 18926 - GH105
CAZyme HRGMv2_0159_37 HRGMv2_0159_37_17 18931 20226 - PL42
CAZyme HRGMv2_0159_37 HRGMv2_0159_37_18 20241 21281 - GH43_24
CAZyme HRGMv2_0159_37 HRGMv2_0159_37_19 21509 23512 - GH154
pfam HRGMv2_0159_37 HRGMv2_0159_37_20 24436 25296 - TonB_C | DUF4488
CAZyme HRGMv2_0159_37 HRGMv2_0159_37_21 25509 27458 - GH97
CAZyme HRGMv2_0159_37 HRGMv2_0159_37_22 27495 29960 - GH51_2
CAZyme HRGMv2_0159_37 HRGMv2_0159_37_23 30338 31303 - GH43_19
CAZyme HRGMv2_0159_37 HRGMv2_0159_37_24 31339 33675 - GH35
Gene ID: HRGMv2_0159_37_12
Type: TC
Location: 14554 - 14997 (+)
Gene ID: HRGMv2_0159_37_13
Type: TC
Location: 14994 - 15689 (+)
Gene ID: HRGMv2_0159_37_14
Type: pfam
Location: 15746 - 16663 (+)
Gene ID: HRGMv2_0159_37_15
Type: pfam
Location: 16677 - 17693 (+)
Gene ID: HRGMv2_0159_37_16
Type: CAZyme
Location: 17793 - 18926 (-)
Gene ID: HRGMv2_0159_37_17
Type: CAZyme
Location: 18931 - 20226 (-)
Gene ID: HRGMv2_0159_37_18
Type: CAZyme
Location: 20241 - 21281 (-)
Gene ID: HRGMv2_0159_37_19
Type: CAZyme
Location: 21509 - 23512 (-)
Gene ID: HRGMv2_0159_37_20
Type: pfam
Location: 24436 - 25296 (-)
Gene ID: HRGMv2_0159_37_21
Type: CAZyme
Location: 25509 - 27458 (-)
Gene ID: HRGMv2_0159_37_22
Type: CAZyme
Location: 27495 - 29960 (-)
Gene ID: HRGMv2_0159_37_23
Type: CAZyme
Location: 30338 - 31303 (-)
Gene ID: HRGMv2_0159_37_24
Type: CAZyme
Location: 31339 - 33675 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Bacteroides
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0159_37_19 vegan > omnivore 1.00300 0.00020
HRGMv2_0159_37_20 vegan > omnivore 1.65710 0.00020
HRGMv2_0159_37_20 vegetarian > omnivore 1.54356 0.00744

🧭 Explore Read Mapping of CGC

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