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Cluster: HRGMv2_0159_CGC121

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0159_36 HRGMv2_0159_36_32 27997 29292 + GH23
STP HRGMv2_0159_36 HRGMv2_0159_36_33 29365 31605 + HD
TF HRGMv2_0159_36 HRGMv2_0159_36_34 31771 32115 - MerR
TC HRGMv2_0159_36 HRGMv2_0159_36_35 32136 33104 - 1.A.34.1.3
pfam HRGMv2_0159_36 HRGMv2_0159_36_36 33277 35895 + tRNA-synt_2c | DHHA1 | tRNA_SAD
CAZyme HRGMv2_0159_36 HRGMv2_0159_36_37 36467 38704 + GH92
TF HRGMv2_0159_36 HRGMv2_0159_36_38 38732 39289 + GerE
STP HRGMv2_0159_36 HRGMv2_0159_36_39 39306 40331 + FecR
CAZyme HRGMv2_0159_36 HRGMv2_0159_36_40 40376 42682 + GH92
CAZyme HRGMv2_0159_36 HRGMv2_0159_36_41 42786 45056 + GH92
NULL(UNKNOWN) HRGMv2_0159_36 HRGMv2_0159_36_42 45043 45312 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0159_36 HRGMv2_0159_36_43 46059 47363 - F5_F8_type_C | DUF4989 | F5_F8_type_C_2
CAZyme HRGMv2_0159_36 HRGMv2_0159_36_44 47384 48811 - GH18
Gene ID: HRGMv2_0159_36_32
Type: CAZyme
Location: 27997 - 29292 (+)
Gene ID: HRGMv2_0159_36_33
Type: STP
Location: 29365 - 31605 (+)
Gene ID: HRGMv2_0159_36_34
Type: TF
Location: 31771 - 32115 (-)
Gene ID: HRGMv2_0159_36_35
Type: TC
Location: 32136 - 33104 (-)
Gene ID: HRGMv2_0159_36_36
Type: pfam
Location: 33277 - 35895 (+)
Gene ID: HRGMv2_0159_36_37
Type: CAZyme
Location: 36467 - 38704 (+)
Gene ID: HRGMv2_0159_36_38
Type: TF
Location: 38732 - 39289 (+)
Gene ID: HRGMv2_0159_36_39
Type: STP
Location: 39306 - 40331 (+)
Gene ID: HRGMv2_0159_36_40
Type: CAZyme
Location: 40376 - 42682 (+)
Gene ID: HRGMv2_0159_36_41
Type: CAZyme
Location: 42786 - 45056 (+)
Gene ID: HRGMv2_0159_36_42
Type:
Location: 45043 - 45312 (-)
Gene ID: HRGMv2_0159_36_43
Type: pfam
Location: 46059 - 47363 (-)
Gene ID: HRGMv2_0159_36_44
Type: CAZyme
Location: 47384 - 48811 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Bacteroides
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0159_36_43 vegetarian > omnivore 1.28360 0.00744

🧭 Explore Read Mapping of CGC

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