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Cluster: HRGMv2_0159_CGC112

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0159_29 HRGMv2_0159_29_2 1530 3068 - CBM91 | GH43_8
CAZyme HRGMv2_0159_29 HRGMv2_0159_29_3 3083 4213 - GH130_3
CAZyme HRGMv2_0159_29 HRGMv2_0159_29_4 4437 6593 - GH92
CAZyme HRGMv2_0159_29 HRGMv2_0159_29_5 6623 8896 - GH92
CAZyme HRGMv2_0159_29 HRGMv2_0159_29_6 8952 10940 - CE20 | CE20
pfam HRGMv2_0159_29 HRGMv2_0159_29_7 11065 12366 - DUF5005
NULL(UNKNOWN) HRGMv2_0159_29 HRGMv2_0159_29_8 12419 12562 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0159_29 HRGMv2_0159_29_9 12989 14833 + 8.A.46.1.3
Gene ID: HRGMv2_0159_29_2
Type: CAZyme
Location: 1530 - 3068 (-)
Gene ID: HRGMv2_0159_29_3
Type: CAZyme
Location: 3083 - 4213 (-)
Gene ID: HRGMv2_0159_29_4
Type: CAZyme
Location: 4437 - 6593 (-)
Gene ID: HRGMv2_0159_29_5
Type: CAZyme
Location: 6623 - 8896 (-)
Gene ID: HRGMv2_0159_29_6
Type: CAZyme
Location: 8952 - 10940 (-)
Gene ID: HRGMv2_0159_29_7
Type: pfam
Location: 11065 - 12366 (-)
Gene ID: HRGMv2_0159_29_8
Type:
Location: 12419 - 12562 (-)
Gene ID: HRGMv2_0159_29_9
Type: TC
Location: 12989 - 14833 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Bacteroides
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0159_29_2 vegan > omnivore 1.40229 0.00020

🧭 Explore Read Mapping of CGC

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