Cluster: HRGMv2_0159_CGC111
🧬 Cluster Details
- Gene Count: 31
- CAZyme Count: 14
- Substrate:
- Genome ID: HRGMv2_0159
- CGC Family ID: CGCFAM_01917
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0159_27 | HRGMv2_0159_27_27 | 45855 | 47714 | - | GH2 |
| CAZyme | HRGMv2_0159_27 | HRGMv2_0159_27_28 | 47884 | 48984 | - | GH105 |
| sulfatase | HRGMv2_0159_27 | HRGMv2_0159_27_29 | 49071 | 50933 | - | S1_24 |
| CAZyme | HRGMv2_0159_27 | HRGMv2_0159_27_30 | 50946 | 53666 | - | GH2 |
| pfam | HRGMv2_0159_27 | HRGMv2_0159_27_31 | 53881 | 55509 | - | DUF6377 |
| CAZyme | HRGMv2_0159_27 | HRGMv2_0159_27_32 | 55834 | 57903 | + | GH115 |
| TC | HRGMv2_0159_27 | HRGMv2_0159_27_33 | 57941 | 61102 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0159_27 | HRGMv2_0159_27_34 | 61123 | 63000 | + | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0159_27 | HRGMv2_0159_27_35 | 63026 | 66103 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0159_27 | HRGMv2_0159_27_36 | 66117 | 67910 | + | SusD_RagB | SusD-like_3 |
| pfam | HRGMv2_0159_27 | HRGMv2_0159_27_37 | 67933 | 68850 | + | BT_3987-like_N |
| CAZyme | HRGMv2_0159_27 | HRGMv2_0159_27_38 | 68878 | 70050 | + | GH76 |
| CAZyme | HRGMv2_0159_27 | HRGMv2_0159_27_39 | 70078 | 72144 | + | GH67 |
| CAZyme | HRGMv2_0159_27 | HRGMv2_0159_27_40 | 72430 | 75378 | + | GH115 |
| CAZyme | HRGMv2_0159_27 | HRGMv2_0159_27_41 | 75380 | 76483 | - | GH43_26 |
| CAZyme | HRGMv2_0159_27 | HRGMv2_0159_27_42 | 76648 | 77637 | + | GH43_34 |
| STP | HRGMv2_0159_27 | HRGMv2_0159_27_43 | 77743 | 78315 | + | Sigma70_r4_2 |
| STP | HRGMv2_0159_27 | HRGMv2_0159_27_44 | 78429 | 79631 | + | FecR |
| TC | HRGMv2_0159_27 | HRGMv2_0159_27_45 | 79790 | 83221 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0159_27 | HRGMv2_0159_27_46 | 83233 | 85152 | + | SusD_RagB | SusD-like_3 |
| CAZyme | HRGMv2_0159_27 | HRGMv2_0159_27_47 | 85179 | 86498 | + | GH76 |
| pfam | HRGMv2_0159_27 | HRGMv2_0159_27_48 | 86524 | 87666 | + | Laminin_G_3 | DUF4972 |
| pfam | HRGMv2_0159_27 | HRGMv2_0159_27_49 | 87689 | 89155 | + | DUF4972 |
| CAZyme | HRGMv2_0159_27 | HRGMv2_0159_27_50 | 89388 | 90647 | + | GH76 |
| NULL(UNKNOWN) | HRGMv2_0159_27 | HRGMv2_0159_27_51 | 90676 | 92847 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| sulfatase | HRGMv2_0159_27 | HRGMv2_0159_27_52 | 92878 | 95355 | + | S1_4 |
| CAZyme | HRGMv2_0159_27 | HRGMv2_0159_27_53 | 95366 | 97657 | + | GH92 |
| CAZyme | HRGMv2_0159_27 | HRGMv2_0159_27_54 | 97660 | 99123 | + | GH125 |
| sulfatase | HRGMv2_0159_27 | HRGMv2_0159_27_55 | 99267 | 100397 | + | S1_22 |
| TC | HRGMv2_0159_27 | HRGMv2_0159_27_56 | 100405 | 101553 | + | 9.B.97.1.2 |
| CAZyme | HRGMv2_0159_27 | HRGMv2_0159_27_57 | 101578 | 103632 | + | GH127 |
Gene ID: HRGMv2_0159_27_27
Type: CAZyme
Location: 45855 - 47714 (-)
Type: CAZyme
Location: 45855 - 47714 (-)
Gene ID: HRGMv2_0159_27_28
Type: CAZyme
Location: 47884 - 48984 (-)
Type: CAZyme
Location: 47884 - 48984 (-)
Gene ID: HRGMv2_0159_27_29
Type: sulfatase
Location: 49071 - 50933 (-)
Type: sulfatase
Location: 49071 - 50933 (-)
Gene ID: HRGMv2_0159_27_30
Type: CAZyme
Location: 50946 - 53666 (-)
Type: CAZyme
Location: 50946 - 53666 (-)
Gene ID: HRGMv2_0159_27_31
Type: pfam
Location: 53881 - 55509 (-)
Type: pfam
Location: 53881 - 55509 (-)
Gene ID: HRGMv2_0159_27_32
Type: CAZyme
Location: 55834 - 57903 (+)
Type: CAZyme
Location: 55834 - 57903 (+)
Gene ID: HRGMv2_0159_27_33
Type: TC
Location: 57941 - 61102 (+)
Type: TC
Location: 57941 - 61102 (+)
Gene ID: HRGMv2_0159_27_34
Type: pfam
Location: 61123 - 63000 (+)
Type: pfam
Location: 61123 - 63000 (+)
Gene ID: HRGMv2_0159_27_35
Type: TC
Location: 63026 - 66103 (+)
Type: TC
Location: 63026 - 66103 (+)
Gene ID: HRGMv2_0159_27_36
Type: pfam
Location: 66117 - 67910 (+)
Type: pfam
Location: 66117 - 67910 (+)
Gene ID: HRGMv2_0159_27_37
Type: pfam
Location: 67933 - 68850 (+)
Type: pfam
Location: 67933 - 68850 (+)
Gene ID: HRGMv2_0159_27_38
Type: CAZyme
Location: 68878 - 70050 (+)
Type: CAZyme
Location: 68878 - 70050 (+)
Gene ID: HRGMv2_0159_27_39
Type: CAZyme
Location: 70078 - 72144 (+)
Type: CAZyme
Location: 70078 - 72144 (+)
Gene ID: HRGMv2_0159_27_40
Type: CAZyme
Location: 72430 - 75378 (+)
Type: CAZyme
Location: 72430 - 75378 (+)
Gene ID: HRGMv2_0159_27_41
Type: CAZyme
Location: 75380 - 76483 (-)
Type: CAZyme
Location: 75380 - 76483 (-)
Gene ID: HRGMv2_0159_27_42
Type: CAZyme
Location: 76648 - 77637 (+)
Type: CAZyme
Location: 76648 - 77637 (+)
Gene ID: HRGMv2_0159_27_43
Type: STP
Location: 77743 - 78315 (+)
Type: STP
Location: 77743 - 78315 (+)
Gene ID: HRGMv2_0159_27_44
Type: STP
Location: 78429 - 79631 (+)
Type: STP
Location: 78429 - 79631 (+)
Gene ID: HRGMv2_0159_27_45
Type: TC
Location: 79790 - 83221 (+)
Type: TC
Location: 79790 - 83221 (+)
Gene ID: HRGMv2_0159_27_46
Type: pfam
Location: 83233 - 85152 (+)
Type: pfam
Location: 83233 - 85152 (+)
Gene ID: HRGMv2_0159_27_47
Type: CAZyme
Location: 85179 - 86498 (+)
Type: CAZyme
Location: 85179 - 86498 (+)
Gene ID: HRGMv2_0159_27_48
Type: pfam
Location: 86524 - 87666 (+)
Type: pfam
Location: 86524 - 87666 (+)
Gene ID: HRGMv2_0159_27_49
Type: pfam
Location: 87689 - 89155 (+)
Type: pfam
Location: 87689 - 89155 (+)
Gene ID: HRGMv2_0159_27_50
Type: CAZyme
Location: 89388 - 90647 (+)
Type: CAZyme
Location: 89388 - 90647 (+)
Gene ID: HRGMv2_0159_27_51
Type:
Location: 90676 - 92847 (+)
Type:
Location: 90676 - 92847 (+)
Gene ID: HRGMv2_0159_27_52
Type: sulfatase
Location: 92878 - 95355 (+)
Type: sulfatase
Location: 92878 - 95355 (+)
Gene ID: HRGMv2_0159_27_53
Type: CAZyme
Location: 95366 - 97657 (+)
Type: CAZyme
Location: 95366 - 97657 (+)
Gene ID: HRGMv2_0159_27_54
Type: CAZyme
Location: 97660 - 99123 (+)
Type: CAZyme
Location: 97660 - 99123 (+)
Gene ID: HRGMv2_0159_27_55
Type: sulfatase
Location: 99267 - 100397 (+)
Type: sulfatase
Location: 99267 - 100397 (+)
Gene ID: HRGMv2_0159_27_56
Type: TC
Location: 100405 - 101553 (+)
Type: TC
Location: 100405 - 101553 (+)
Gene ID: HRGMv2_0159_27_57
Type: CAZyme
Location: 101578 - 103632 (+)
Type: CAZyme
Location: 101578 - 103632 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0159_27_30 | vegan > omnivore | 1.10096 | 0.00020 |
| HRGMv2_0159_27_39 | vegan > omnivore | 1.67426 | 0.00020 |
| HRGMv2_0159_27_39 | vegetarian > omnivore | 1.20459 | 0.00744 |
| HRGMv2_0159_27_43 | vegan > omnivore | 1.03703 | 0.00020 |