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Cluster: HRGMv2_0159_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0159_2 HRGMv2_0159_2_145 198131 199486 + 9.B.145.1.2
peptidase HRGMv2_0159_2 HRGMv2_0159_2_146 199506 201647 + S46.001
pfam HRGMv2_0159_2 HRGMv2_0159_2_147 201676 202542 - EamA | EamA
CAZyme HRGMv2_0159_2 HRGMv2_0159_2_148 202762 205410 + CBM67 | GH78
TC HRGMv2_0159_2 HRGMv2_0159_2_149 205568 207502 - 3.A.18.1.1
pfam HRGMv2_0159_2 HRGMv2_0159_2_150 207617 208684 - Y_phosphatase2 | Y_phosphatase3 | PTP-SAK
CAZyme HRGMv2_0159_2 HRGMv2_0159_2_151 208847 210316 - GH125
CAZyme HRGMv2_0159_2 HRGMv2_0159_2_152 210355 211515 - GH76
Gene ID: HRGMv2_0159_2_145
Type: TC
Location: 198131 - 199486 (+)
Gene ID: HRGMv2_0159_2_146
Type: peptidase
Location: 199506 - 201647 (+)
Gene ID: HRGMv2_0159_2_147
Type: pfam
Location: 201676 - 202542 (-)
Gene ID: HRGMv2_0159_2_148
Type: CAZyme
Location: 202762 - 205410 (+)
Gene ID: HRGMv2_0159_2_149
Type: TC
Location: 205568 - 207502 (-)
Gene ID: HRGMv2_0159_2_150
Type: pfam
Location: 207617 - 208684 (-)
Gene ID: HRGMv2_0159_2_151
Type: CAZyme
Location: 208847 - 210316 (-)
Gene ID: HRGMv2_0159_2_152
Type: CAZyme
Location: 210355 - 211515 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Bacteroides
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0159_2_147 vegan > omnivore 1.45754 0.00020
HRGMv2_0159_2_148 vegan > omnivore 1.20418 0.00020

🧭 Explore Read Mapping of CGC

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