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Cluster: HRGMv2_0159_CGC108

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0159_25 HRGMv2_0159_25_41 64576 67167 + GH3
CAZyme HRGMv2_0159_25 HRGMv2_0159_25_42 68032 69606 - GH28
CAZyme HRGMv2_0159_25 HRGMv2_0159_25_43 69633 72044 - CE8
pfam HRGMv2_0159_25 HRGMv2_0159_25_44 72086 73942 - Mfa_like_1
pfam HRGMv2_0159_25 HRGMv2_0159_25_45 73999 75651 - DUF5123
TC HRGMv2_0159_25 HRGMv2_0159_25_46 75672 77573 - 8.A.46.1.3
TC HRGMv2_0159_25 HRGMv2_0159_25_47 77599 80811 - 1.B.14.6.1
CAZyme HRGMv2_0159_25 HRGMv2_0159_25_48 80856 83243 - PL1_2
pfam HRGMv2_0159_25 HRGMv2_0159_25_49 83278 85083 - Beta_helix | DUF5123
NULL(UNKNOWN) HRGMv2_0159_25 HRGMv2_0159_25_50 85097 85981 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0159_25 HRGMv2_0159_25_51 86400 87929 - PL1_2
TF HRGMv2_0159_25 HRGMv2_0159_25_52 88048 88866 - LytTR
TC HRGMv2_0159_25 HRGMv2_0159_25_53 88870 89664 - 9.B.116.3.2
TC HRGMv2_0159_25 HRGMv2_0159_25_54 90018 93266 + 1.B.14.6.1
pfam HRGMv2_0159_25 HRGMv2_0159_25_55 93292 95196 + SusD_RagB | SusD-like_3
pfam HRGMv2_0159_25 HRGMv2_0159_25_56 95215 97092 + DUF5123
CAZyme HRGMv2_0159_25 HRGMv2_0159_25_57 97176 98819 + CE8
CAZyme HRGMv2_0159_25 HRGMv2_0159_25_58 98914 100491 + PL1_2
CAZyme HRGMv2_0159_25 HRGMv2_0159_25_59 100523 102181 + PL1_2
CAZyme HRGMv2_0159_25 HRGMv2_0159_25_60 102217 103713 + PL1_2
Gene ID: HRGMv2_0159_25_41
Type: CAZyme
Location: 64576 - 67167 (+)
Gene ID: HRGMv2_0159_25_42
Type: CAZyme
Location: 68032 - 69606 (-)
Gene ID: HRGMv2_0159_25_43
Type: CAZyme
Location: 69633 - 72044 (-)
Gene ID: HRGMv2_0159_25_44
Type: pfam
Location: 72086 - 73942 (-)
Gene ID: HRGMv2_0159_25_45
Type: pfam
Location: 73999 - 75651 (-)
Gene ID: HRGMv2_0159_25_46
Type: TC
Location: 75672 - 77573 (-)
Gene ID: HRGMv2_0159_25_47
Type: TC
Location: 77599 - 80811 (-)
Gene ID: HRGMv2_0159_25_48
Type: CAZyme
Location: 80856 - 83243 (-)
Gene ID: HRGMv2_0159_25_49
Type: pfam
Location: 83278 - 85083 (-)
Gene ID: HRGMv2_0159_25_50
Type:
Location: 85097 - 85981 (-)
Gene ID: HRGMv2_0159_25_51
Type: CAZyme
Location: 86400 - 87929 (-)
Gene ID: HRGMv2_0159_25_52
Type: TF
Location: 88048 - 88866 (-)
Gene ID: HRGMv2_0159_25_53
Type: TC
Location: 88870 - 89664 (-)
Gene ID: HRGMv2_0159_25_54
Type: TC
Location: 90018 - 93266 (+)
Gene ID: HRGMv2_0159_25_55
Type: pfam
Location: 93292 - 95196 (+)
Gene ID: HRGMv2_0159_25_56
Type: pfam
Location: 95215 - 97092 (+)
Gene ID: HRGMv2_0159_25_57
Type: CAZyme
Location: 97176 - 98819 (+)
Gene ID: HRGMv2_0159_25_58
Type: CAZyme
Location: 98914 - 100491 (+)
Gene ID: HRGMv2_0159_25_59
Type: CAZyme
Location: 100523 - 102181 (+)
Gene ID: HRGMv2_0159_25_60
Type: CAZyme
Location: 102217 - 103713 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Bacteroides
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0159_25_43 vegan > omnivore 1.87708 0.00020
HRGMv2_0159_25_44 vegan > omnivore 1.71361 0.00020
HRGMv2_0159_25_45 vegan > omnivore 1.63896 0.00020
HRGMv2_0159_25_46 vegan > omnivore 1.25671 0.00020
HRGMv2_0159_25_47 vegan > omnivore 1.56084 0.00020
HRGMv2_0159_25_48 vegan > omnivore 1.67544 0.00020
HRGMv2_0159_25_49 vegan > omnivore 2.37110 0.00020
HRGMv2_0159_25_49 vegetarian > omnivore 1.49554 0.00744
HRGMv2_0159_25_50 vegan > omnivore 3.66353 0.00020
HRGMv2_0159_25_50 vegetarian > omnivore 2.22867 0.00744
HRGMv2_0159_25_51 vegan > omnivore 1.21917 0.00020
HRGMv2_0159_25_55 vegetarian > omnivore 1.16642 0.00744
HRGMv2_0159_25_58 vegan > omnivore 1.30567 0.00020
HRGMv2_0159_25_58 vegetarian > omnivore 1.28543 0.00744

🧭 Explore Read Mapping of CGC

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