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Cluster: HRGMv2_0159_CGC107

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0159_25 HRGMv2_0159_25_1 211 3342 + 1.B.14.6.1
pfam HRGMv2_0159_25 HRGMv2_0159_25_2 3367 5448 + SusD_RagB | SusD-like_3
pfam HRGMv2_0159_25 HRGMv2_0159_25_3 5541 6230 - Lipase_GDSL_2 | Lipase_GDSL_lke
CAZyme HRGMv2_0159_25 HRGMv2_0159_25_4 6319 7704 - GH28
NULL(UNKNOWN) HRGMv2_0159_25 HRGMv2_0159_25_5 7750 8115 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0159_25 HRGMv2_0159_25_6 8154 10223 - GH42
CAZyme HRGMv2_0159_25 HRGMv2_0159_25_7 10287 12644 - GH43_18 | GH43_34
CAZyme HRGMv2_0159_25 HRGMv2_0159_25_8 12717 15764 + GH2
CAZyme HRGMv2_0159_25 HRGMv2_0159_25_9 15821 17059 + CE12
CAZyme HRGMv2_0159_25 HRGMv2_0159_25_10 17108 18643 + GH28
pfam HRGMv2_0159_25 HRGMv2_0159_25_11 18594 19196 + DUF4450
CAZyme HRGMv2_0159_25 HRGMv2_0159_25_12 19193 20596 + GH28
CAZyme HRGMv2_0159_25 HRGMv2_0159_25_13 20593 23406 + GH106
STP HRGMv2_0159_25 HRGMv2_0159_25_14 23662 24834 - Aminotran_1_2
NULL(UNKNOWN) HRGMv2_0159_25 HRGMv2_0159_25_15 25019 26290 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0159_25 HRGMv2_0159_25_16 26415 28088 - 8.A.46.1.3
TC HRGMv2_0159_25 HRGMv2_0159_25_17 28118 31303 - 1.B.14.6.1
pfam HRGMv2_0159_25 HRGMv2_0159_25_18 31437 33098 - GxGYxYP_C | GxGYxYP_N
NULL(UNKNOWN) HRGMv2_0159_25 HRGMv2_0159_25_19 33124 33990 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0159_25 HRGMv2_0159_25_20 34047 36323 - GH92
Gene ID: HRGMv2_0159_25_1
Type: TC
Location: 211 - 3342 (+)
Gene ID: HRGMv2_0159_25_2
Type: pfam
Location: 3367 - 5448 (+)
Gene ID: HRGMv2_0159_25_3
Type: pfam
Location: 5541 - 6230 (-)
Gene ID: HRGMv2_0159_25_4
Type: CAZyme
Location: 6319 - 7704 (-)
Gene ID: HRGMv2_0159_25_5
Type:
Location: 7750 - 8115 (-)
Gene ID: HRGMv2_0159_25_6
Type: CAZyme
Location: 8154 - 10223 (-)
Gene ID: HRGMv2_0159_25_7
Type: CAZyme
Location: 10287 - 12644 (-)
Gene ID: HRGMv2_0159_25_8
Type: CAZyme
Location: 12717 - 15764 (+)
Gene ID: HRGMv2_0159_25_9
Type: CAZyme
Location: 15821 - 17059 (+)
Gene ID: HRGMv2_0159_25_10
Type: CAZyme
Location: 17108 - 18643 (+)
Gene ID: HRGMv2_0159_25_11
Type: pfam
Location: 18594 - 19196 (+)
Gene ID: HRGMv2_0159_25_12
Type: CAZyme
Location: 19193 - 20596 (+)
Gene ID: HRGMv2_0159_25_13
Type: CAZyme
Location: 20593 - 23406 (+)
Gene ID: HRGMv2_0159_25_14
Type: STP
Location: 23662 - 24834 (-)
Gene ID: HRGMv2_0159_25_15
Type:
Location: 25019 - 26290 (-)
Gene ID: HRGMv2_0159_25_16
Type: TC
Location: 26415 - 28088 (-)
Gene ID: HRGMv2_0159_25_17
Type: TC
Location: 28118 - 31303 (-)
Gene ID: HRGMv2_0159_25_18
Type: pfam
Location: 31437 - 33098 (-)
Gene ID: HRGMv2_0159_25_19
Type:
Location: 33124 - 33990 (-)
Gene ID: HRGMv2_0159_25_20
Type: CAZyme
Location: 34047 - 36323 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Bacteroides
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0159_25_5 vegan > omnivore 1.20576 0.00020
HRGMv2_0159_25_5 vegetarian > omnivore 1.09693 0.00744
HRGMv2_0159_25_16 vegan > omnivore 1.28590 0.00020
HRGMv2_0159_25_17 vegan > omnivore 1.66854 0.00020
HRGMv2_0159_25_18 vegan > omnivore 2.28221 0.00020

🧭 Explore Read Mapping of CGC

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