dbCAN HGM

Cluster: HRGMv2_0159_CGC105

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	HRGMv2_0159_24	HRGMv2_0159_24_60	83929	85983	+	1.B.14.15.2
STP	HRGMv2_0159_24	HRGMv2_0159_24_61	86001	86849	+	SBP_bac_3
TF	HRGMv2_0159_24	HRGMv2_0159_24_62	86836	91026	+	HTH_AraC \| HTH_AraC
CAZyme	HRGMv2_0159_24	HRGMv2_0159_24_63	91325	92581	+	GH88
CAZyme	HRGMv2_0159_24	HRGMv2_0159_24_64	92603	95080	+	GH2
CAZyme	HRGMv2_0159_24	HRGMv2_0159_24_65	95077	96249	+	PL38
CAZyme	HRGMv2_0159_24	HRGMv2_0159_24_66	96271	97473	+	PL38
TC	HRGMv2_0159_24	HRGMv2_0159_24_67	97497	100604	+	1.B.14.6.1
TC	HRGMv2_0159_24	HRGMv2_0159_24_68	100625	102115	+	8.A.46.1.5
pfam	HRGMv2_0159_24	HRGMv2_0159_24_69	102135	103706	+	TIG
NULL(UNKNOWN)	HRGMv2_0159_24	HRGMv2_0159_24_70	103719	105185	+	NULL(UNKNOWN) [View Structural Homologs]
CAZyme	HRGMv2_0159_24	HRGMv2_0159_24_71	105617	106603	+	GH109
pfam	HRGMv2_0159_24	HRGMv2_0159_24_72	106759	107229	+	dCMP_cyt_deam_1 \| MafB19-deam
pfam	HRGMv2_0159_24	HRGMv2_0159_24_73	107269	108078	+	Mfa_like_1
TC	HRGMv2_0159_24	HRGMv2_0159_24_74	108200	109834	-	1.B.9.4.2

Gene ID: HRGMv2_0159_24_60
Type: TC
Location: 83929 - 85983 (+)

Gene ID: HRGMv2_0159_24_61
Type: STP
Location: 86001 - 86849 (+)

Gene ID: HRGMv2_0159_24_62
Type: TF
Location: 86836 - 91026 (+)

Gene ID: HRGMv2_0159_24_63
Type: CAZyme
Location: 91325 - 92581 (+)

Gene ID: HRGMv2_0159_24_64
Type: CAZyme
Location: 92603 - 95080 (+)

Gene ID: HRGMv2_0159_24_65
Type: CAZyme
Location: 95077 - 96249 (+)

Gene ID: HRGMv2_0159_24_66
Type: CAZyme
Location: 96271 - 97473 (+)

Gene ID: HRGMv2_0159_24_67
Type: TC
Location: 97497 - 100604 (+)

Gene ID: HRGMv2_0159_24_68
Type: TC
Location: 100625 - 102115 (+)

Gene ID: HRGMv2_0159_24_69
Type: pfam
Location: 102135 - 103706 (+)

Gene ID: HRGMv2_0159_24_70
Type:
Location: 103719 - 105185 (+)

Gene ID: HRGMv2_0159_24_71
Type: CAZyme
Location: 105617 - 106603 (+)

Gene ID: HRGMv2_0159_24_72
Type: pfam
Location: 106759 - 107229 (+)

Gene ID: HRGMv2_0159_24_73
Type: pfam
Location: 107269 - 108078 (+)

Gene ID: HRGMv2_0159_24_74
Type: TC
Location: 108200 - 109834 (-)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_0159_24_62	vegetarian > omnivore	1.22701	0.00744
HRGMv2_0159_24_62	vegan > omnivore	1.76453	0.00020
HRGMv2_0159_24_63	vegan > omnivore	2.16044	0.00020
HRGMv2_0159_24_63	vegetarian > omnivore	2.60270	0.00744
HRGMv2_0159_24_64	vegan > omnivore	1.86139	0.00020
HRGMv2_0159_24_64	vegetarian > omnivore	1.58756	0.00744
HRGMv2_0159_24_65	vegetarian > omnivore	1.57904	0.00744
HRGMv2_0159_24_65	vegan > omnivore	1.67165	0.00020
HRGMv2_0159_24_66	vegetarian > omnivore	3.26164	0.00689
HRGMv2_0159_24_66	vegan > omnivore	2.39926	0.00020
HRGMv2_0159_24_67	vegan > omnivore	1.68656	0.00020
HRGMv2_0159_24_67	vegetarian > omnivore	1.57263	0.00744
HRGMv2_0159_24_68	vegan > omnivore	2.77186	0.00020
HRGMv2_0159_24_68	vegetarian > omnivore	2.85411	0.00744
HRGMv2_0159_24_69	vegetarian > omnivore	1.57925	0.00744
HRGMv2_0159_24_69	vegan > omnivore	2.03578	0.00020
HRGMv2_0159_24_70	vegetarian > omnivore	1.42925	0.00744
HRGMv2_0159_24_70	vegan > omnivore	2.03774	0.00020

Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_0159_24_62	nonIBD > CD	2.90446	0.01401
HRGMv2_0159_24_62	UC > CD	1.97360	0.00726
HRGMv2_0159_24_63	nonIBD > CD	1.91353	0.01401
HRGMv2_0159_24_63	UC > CD	1.52418	0.00726
HRGMv2_0159_24_64	nonIBD > CD	2.78168	0.01401
HRGMv2_0159_24_64	UC > CD	2.31263	0.00726
HRGMv2_0159_24_65	nonIBD > CD	2.91839	0.01401
HRGMv2_0159_24_65	UC > CD	2.36398	0.00726
HRGMv2_0159_24_66	nonIBD > CD	2.99637	0.01401
HRGMv2_0159_24_66	UC > CD	2.75357	0.00726
HRGMv2_0159_24_68	UC > CD	3.05643	0.00726
HRGMv2_0159_24_68	nonIBD > CD	3.72530	0.01401
HRGMv2_0159_24_69	nonIBD > CD	4.02948	0.01401
HRGMv2_0159_24_69	UC > CD	3.37493	0.00726
HRGMv2_0159_24_70	UC > CD	1.45342	0.00726