Cluster: HRGMv2_0159_CGC102
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_0159
- CGC Family ID: CGCFAM_00297
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0159_24 | HRGMv2_0159_24_11 | 13449 | 14759 | + | 2.A.1.7.2 |
| pfam | HRGMv2_0159_24 | HRGMv2_0159_24_12 | 14868 | 16022 | + | GHMP_kinases_N | GHMP_kinases_C | GalKase_gal_bdg |
| CAZyme | HRGMv2_0159_24 | HRGMv2_0159_24_13 | 16155 | 17123 | - | GH43_29 |
| CAZyme | HRGMv2_0159_24 | HRGMv2_0159_24_14 | 17120 | 19102 | - | GH51_2 |
| CAZyme | HRGMv2_0159_24 | HRGMv2_0159_24_15 | 19131 | 20651 | - | GH43_4 |
| TF | HRGMv2_0159_24 | HRGMv2_0159_24_16 | 20828 | 25099 | + | HTH_AraC |
| NULL(UNKNOWN) | HRGMv2_0159_24 | HRGMv2_0159_24_17 | 25157 | 25252 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0159_24 | HRGMv2_0159_24_18 | 25283 | 28546 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0159_24 | HRGMv2_0159_24_19 | 28586 | 30337 | + | SusD_RagB | SusD-like_3 |
| pfam | HRGMv2_0159_24 | HRGMv2_0159_24_20 | 30370 | 32154 | + | Big_3 |
| CAZyme | HRGMv2_0159_24 | HRGMv2_0159_24_21 | 32224 | 34152 | + | GH43_4 |
| sulfatase | HRGMv2_0159_24 | HRGMv2_0159_24_22 | 34323 | 35462 | + | S1_22 |
| TC | HRGMv2_0159_24 | HRGMv2_0159_24_23 | 35495 | 37240 | + | 2.A.21.3.19 |
Gene ID: HRGMv2_0159_24_11
Type: TC
Location: 13449 - 14759 (+)
Type: TC
Location: 13449 - 14759 (+)
Gene ID: HRGMv2_0159_24_12
Type: pfam
Location: 14868 - 16022 (+)
Type: pfam
Location: 14868 - 16022 (+)
Gene ID: HRGMv2_0159_24_13
Type: CAZyme
Location: 16155 - 17123 (-)
Type: CAZyme
Location: 16155 - 17123 (-)
Gene ID: HRGMv2_0159_24_14
Type: CAZyme
Location: 17120 - 19102 (-)
Type: CAZyme
Location: 17120 - 19102 (-)
Gene ID: HRGMv2_0159_24_15
Type: CAZyme
Location: 19131 - 20651 (-)
Type: CAZyme
Location: 19131 - 20651 (-)
Gene ID: HRGMv2_0159_24_16
Type: TF
Location: 20828 - 25099 (+)
Type: TF
Location: 20828 - 25099 (+)
Gene ID: HRGMv2_0159_24_17
Type:
Location: 25157 - 25252 (-)
Type:
Location: 25157 - 25252 (-)
Gene ID: HRGMv2_0159_24_18
Type: TC
Location: 25283 - 28546 (+)
Type: TC
Location: 25283 - 28546 (+)
Gene ID: HRGMv2_0159_24_19
Type: pfam
Location: 28586 - 30337 (+)
Type: pfam
Location: 28586 - 30337 (+)
Gene ID: HRGMv2_0159_24_20
Type: pfam
Location: 30370 - 32154 (+)
Type: pfam
Location: 30370 - 32154 (+)
Gene ID: HRGMv2_0159_24_21
Type: CAZyme
Location: 32224 - 34152 (+)
Type: CAZyme
Location: 32224 - 34152 (+)
Gene ID: HRGMv2_0159_24_22
Type: sulfatase
Location: 34323 - 35462 (+)
Type: sulfatase
Location: 34323 - 35462 (+)
Gene ID: HRGMv2_0159_24_23
Type: TC
Location: 35495 - 37240 (+)
Type: TC
Location: 35495 - 37240 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0159_24_23 | vegan > omnivore | 1.06584 | 0.00020 |
| HRGMv2_0159_24_23 | vegetarian > omnivore | 1.15975 | 0.00744 |