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Cluster: HRGMv2_0159_CGC101

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0159_23 HRGMv2_0159_23_22 36243 37526 + CE12
NULL(UNKNOWN) HRGMv2_0159_23 HRGMv2_0159_23_23 37609 38382 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0159_23 HRGMv2_0159_23_24 38987 40591 - 8.A.46.1.3
TC HRGMv2_0159_23 HRGMv2_0159_23_25 40611 43742 - 1.B.14.6.1
pfam HRGMv2_0159_23 HRGMv2_0159_23_26 43954 44832 - SASA
CAZyme HRGMv2_0159_23 HRGMv2_0159_23_27 44964 47927 - GH2
TF HRGMv2_0159_23 HRGMv2_0159_23_28 48127 52464 - HTH_AraC
CAZyme HRGMv2_0159_23 HRGMv2_0159_23_29 52602 54503 - PL11
CAZyme HRGMv2_0159_23 HRGMv2_0159_23_30 54724 56187 + GH28
CAZyme HRGMv2_0159_23 HRGMv2_0159_23_31 56701 58245 + PL9_1
NULL(UNKNOWN) HRGMv2_0159_23 HRGMv2_0159_23_32 58292 58726 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0159_23 HRGMv2_0159_23_33 59023 60333 + GH28
CAZyme HRGMv2_0159_23 HRGMv2_0159_23_34 60534 63065 + CE20 | GH105
CAZyme HRGMv2_0159_23 HRGMv2_0159_23_35 63130 64695 + PL1_2
pfam HRGMv2_0159_23 HRGMv2_0159_23_36 64710 66932 + Fasciclin
TC HRGMv2_0159_23 HRGMv2_0159_23_37 66949 70218 + 1.B.14.6.1
Gene ID: HRGMv2_0159_23_22
Type: CAZyme
Location: 36243 - 37526 (+)
Gene ID: HRGMv2_0159_23_23
Type:
Location: 37609 - 38382 (+)
Gene ID: HRGMv2_0159_23_24
Type: TC
Location: 38987 - 40591 (-)
Gene ID: HRGMv2_0159_23_25
Type: TC
Location: 40611 - 43742 (-)
Gene ID: HRGMv2_0159_23_26
Type: pfam
Location: 43954 - 44832 (-)
Gene ID: HRGMv2_0159_23_27
Type: CAZyme
Location: 44964 - 47927 (-)
Gene ID: HRGMv2_0159_23_28
Type: TF
Location: 48127 - 52464 (-)
Gene ID: HRGMv2_0159_23_29
Type: CAZyme
Location: 52602 - 54503 (-)
Gene ID: HRGMv2_0159_23_30
Type: CAZyme
Location: 54724 - 56187 (+)
Gene ID: HRGMv2_0159_23_31
Type: CAZyme
Location: 56701 - 58245 (+)
Gene ID: HRGMv2_0159_23_32
Type:
Location: 58292 - 58726 (+)
Gene ID: HRGMv2_0159_23_33
Type: CAZyme
Location: 59023 - 60333 (+)
Gene ID: HRGMv2_0159_23_34
Type: CAZyme
Location: 60534 - 63065 (+)
Gene ID: HRGMv2_0159_23_35
Type: CAZyme
Location: 63130 - 64695 (+)
Gene ID: HRGMv2_0159_23_36
Type: pfam
Location: 64710 - 66932 (+)
Gene ID: HRGMv2_0159_23_37
Type: TC
Location: 66949 - 70218 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Bacteroides
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0159_23_22 vegan > omnivore 1.86168 0.00020
HRGMv2_0159_23_22 vegetarian > omnivore 1.00562 0.00744
HRGMv2_0159_23_23 vegan > omnivore 2.31794 0.00020
HRGMv2_0159_23_23 vegetarian > omnivore 1.73248 0.00744
HRGMv2_0159_23_24 vegan > omnivore 1.72012 0.00020
HRGMv2_0159_23_24 vegetarian > omnivore 1.57140 0.00744
HRGMv2_0159_23_25 vegan > omnivore 1.45457 0.00020
HRGMv2_0159_23_25 vegetarian > omnivore 1.07950 0.00744
HRGMv2_0159_23_26 vegetarian > omnivore 1.21968 0.00744
HRGMv2_0159_23_26 vegan > omnivore 1.52361 0.00020
HRGMv2_0159_23_28 vegetarian > omnivore 1.08734 0.00744
HRGMv2_0159_23_28 vegan > omnivore 1.74519 0.00020
HRGMv2_0159_23_31 vegan > omnivore 1.15341 0.00020
HRGMv2_0159_23_32 vegetarian > omnivore 1.25837 0.00744
HRGMv2_0159_23_32 vegan > omnivore 1.60524 0.00020
HRGMv2_0159_23_35 vegetarian > omnivore 2.23604 0.00744
HRGMv2_0159_23_35 vegan > omnivore 2.11904 0.00020
HRGMv2_0159_23_37 vegan > omnivore 2.11305 0.00020
HRGMv2_0159_23_37 vegetarian > omnivore 2.44139 0.00744

🧭 Explore Read Mapping of CGC

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